Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2563 ATGAAGTTCCAATTCCATGCTGTTCCATTTGTTCTACTAAGCTTCATAGCGTCTCTTTTTGGCCTGATTGTAGCTGACTTGAACTCTGACAGACAAGCTCTCCTTGAGTTCTTTTCCAATGTTCCACATGCCCCAAGGTTAAACTGGAGTGAGTCTACTCCAATTTGCACTTCATGGGCTGGTGTGACTTGCAACCAAAATGGAACTAGTGTCGTTGGCATCCATCTTCCAGGGGCTGGATTCAAGGGCTCCATTCCAGAGAACAGCCTAGGAAAACTAGATTCCCTTAAAATCCTGAGCCTTCGCTCTAATGGCCTTAGAGGAAACATTCCTTCTGACATCCTCTCCATTCCTTCACTCCAATATGTAAACCTGCAGCAGAATAACTTCTCAGGTCTAATCCCTTCCTCTATCTCCCCTAAACTTATAGCATTGGATATTTCCTCTAACAACTTCTCTGGCAGTATCCCACCTACCTTTCAGAATCTCAGTAGACTCACCTCGTTGTATCTCCAAAACAATTCCATCTCTGGGACTATCCCTGACCTCAACCTTACAAGTCTCaagtatttgaatttgagctaTAACAACTTCAATGGCTCAATTCCAAATTCCATCAACAAATTTCCATATACTTCTTTTGTTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAATTGTTCTGAAGTCTCCCctccatcatcttcttcttcctctccttctcctcctccttctccttctcctgtTTATCAACCACTCTCTCCTGCAACTCCCCAAAATAGAAGTGCTTCTGCTACCACTACAAAGAGTTACTTTGGCTTAGCTTCTATACTTGCTCTTGCAATTGGGGGTTGTGCCTTCCTCTCTCTCCTAGTTTTGGTGGTCTTTGTATGCTGTTTGAAGAGGAATAAGAGTCAAAGCAGTGGCATACTGAAAGGAAAGGCACCTTGTGATGGAAAGGCCGAGGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAGAGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGGTTGCTCTTATAGCTTTGACCTTGAAGATTTACTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGGGCTGCTTTGGAGGATGGAACAACAGTGGTAGTAAAAAGGTTGAGGGAAGTTCTGGTTGGAAAGAGGGAGTTTGAGCAGCAAATGGAGGTTGTAGGAAGAATTGGTCGGCACCCCAATGTCCTGCCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTTTATGACTACATGCCAGGAGGCAGCTTGTTGTCCTTGTTGCATGGAAACAGAAGCATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCACACTGATCACATGGGTTCAAAACTCACTCATGGCAACATCAAGTCCTCCAATGTGCTCATAACCCAAGAACATGATGGCTGCATTGCTGATGTTGGACTTACTCCTATGATGAGCACTCAATCAACCATGTCAGGAGCCAACGGCTACCGTGCTCCCGAAGTAACCGAGTCCCGGAGGATCACTCAGAAGTCTGATGTTTACAGCTTTGGGGTGCTCCTTCTTGAAATTCTCACTGGCAAGACCCCACTGGGATATCCTGGTTATGATGACATGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTCGCGAGGAATGGACAGCTGAAGTTTTTGATGAGGAACTGCTTAGAGGGCAATATTTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCCTGTGTGGCAAAGTTGGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAAGAACCGTAACACATCATCTGAGTCTGAATCTAATGTACAAACCCcatga 1953 0.4296 MKFQFHAVPFVLLSFIASLFGLIVADLNSDRQALLEFFSNVPHAPRLNWSESTPICTSWAGVTCNQNGTSVVGIHLPGAGFKGSIPENSLGKLDSLKILSLRSNGLRGNIPSDILSIPSLQYVNLQQNNFSGLIPSSISPKLIALDISSNNFSGSIPPTFQNLSRLTSLYLQNNSISGTIPDLNLTSLKYLNLSYNNFNGSIPNSINKFPYTSFVGNSHLCGPPLNNCSEVSPPSSSSSSPSPPPSPSPVYQPLSPATPQNRSASATTTKSYFGLASILALAIGGCAFLSLLVLVVFVCCLKRNKSQSSGILKGKAPCDGKAEVSKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAALEDGTTVVVKRLREVLVGKREFEQQMEVVGRIGRHPNVLPLRAYYYSKDEKLLVYDYMPGGSLLSLLHGNRSMGRAPLDWDSRMKIALGAAKGIASIHTDHMGSKLTHGNIKSSNVLITQEHDGCIADVGLTPMMSTQSTMSGANGYRAPEVTESRRITQKSDVYSFGVLLLEILTGKTPLGYPGYDDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKLADNRPTMDETVRNIEEIRLPELKNRNTSSESESNVQTP 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2563 650 ProSitePatterns Protein kinases ATP-binding region signature. 363 394 IPR017441 GO:0005524
Ssu6g2563 650 SUPERFAMILY L domain-like 40 225 - -
Ssu6g2563 650 ProSiteProfiles Protein kinase domain profile. 357 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2563 650 PANTHER OS05G0588300 PROTEIN 5 650 - -
Ssu6g2563 650 Gene3D Transferase(Phosphotransferase) domain 1 433 648 - -
Ssu6g2563 650 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Ssu6g2563 650 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515
Ssu6g2563 650 CDD STKc_IRAK 363 629 - -
Ssu6g2563 650 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Ssu6g2563 650 MobiDBLite consensus disorder prediction 231 263 - -
Ssu6g2563 650 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Ssu6g2563 650 Gene3D Phosphorylase Kinase; domain 1 322 432 - -
Ssu6g2563 650 Pfam Protein tyrosine and serine/threonine kinase 361 625 IPR001245 GO:0004672|GO:0006468
Ssu6g2563 650 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Ssu6g2563 650 MobiDBLite consensus disorder prediction 237 254 - -
Ssu6g2563 650 PANTHER LRR RECEPTOR-LIKE KINASE 5 650 - -
Ssu6g2563 650 SUPERFAMILY Protein kinase-like (PK-like) 361 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2563 Ssu-Chr6 60316414 60318901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2563 5 649 Receptor kinase-like Gene Family AT5G58300 56.902 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g2563 PK_Tyr_Ser-Thr 2.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2563 - - gmx:100775340 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2563 6 60316414 60318901 Ssu1g2691 1 72853614 72856283 PCT