Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2562 ATGGACACCAACAAAGGTGTCCTCTCAAAACTTGACAAAGCCAAGACACAAAGGTACCATTTCATGGCAGTTGGGATAGCCGGGATGGGGTTCTTCACTGATGCATATGATCTGTTTTGCATCACTGCAGTTATCAAGCTTATAGGTCGCTTGTACTACTATGACCCCAATAGTCACAGTCCAGGAAAGCTTCCAAAGAATGTAAACAACGCAATAACCGGAGTAGCATTGTGTGGCACCCTTACGGGGCAACTCTTCTTTGGCTGGCTGGGTGACAAACTTGGCAGGAAAAAGGTTTATGGCATAACACTTGCCACCATGGTGGGGTGTGCATTGGCATCAGGGCTTTCCTTTGGCTCCACAGCCAAAAGTGTGGTTGCTAGTCTTTGCTTCTTCAGGTTCTGGCTAGGATTTGGCATTGGAGGAGACTACCCTCTCTCAGCTGTTATAATGTCTGAATATGCCAATCAAAAGACCCGAGGAGCTTTTGTTGCTGCTGTATTTGCTATGCAAGGGGTGGGAATATTAGTTGCTGGAGGTGTGGCCATGTTAGTCTCCAAACAGTTCTTAGCAGCTTATCCAGCTAGAAATTTTGCAGCTGATCCTGTGCAATCTACTCAGCCACAAGGAGACTTTGTCTGGAGAATAGTGCTCATGTTTGGTGCATTTCCTGCGGCCTTCACTTATTACTGGAGAATGAAAATGCCAGAAACTGCAAGGTACACTGCCTTGGTGGAAGGAGATCACAAGAAGGCTGTTGAAGATATGGCCAAAGTTCTTGATAAGGATATACCTTCAGAAGAACCAAATACCAGGGTTGCTGCCACACCTGGCCCCTCATATGGATTATTCTCTTCAGAGTTTCTTAAAAAGCACGGCCTTCACCTTCTAGGAACAACCAGCGCTTGGTTCTGGTTGGATATTGCCTTCTATAGTCTTCAGCTAACACAAAAAGATATTTACCCTGCAAGTGGACTTGTACCCAAGGCTTCCCAGATGAATGCCATAGAGGAGGTGTTTCTACTCTCCAGAGCAATGTTTGTGGTGGCTCTCCTTGCCACAGTCCCTGGATACTGGTTCACAGTGTACTTCATTGACAAGATTGGTAGGCACAAAATCCAACTTGTTGGATTTTTTGTAATGTCTGTTTGCATGTGGCTTTTGGGACAAAATTATGGAGAATATAGGGGAGTGGAGTGCAGCCcagataaaaaatatgattattgtgATGGAAAACACACCAGGTTTGTCATTCTTTTTGGAGTCACCCTCTTCTTTGCAAACTTCGGACCAAATAGCACAACATTTATAGTACCAGCAGAGCTGTTCCCTGCTAGATTCCGTTCAACATGCCATGGAATATCAGCAGCAGCTGGGAAAGCAGGAGCTATCATTGGTGCTTTTGTGGTGCAAGGCTATACAGATAATgcagaaaacaaaataagaggaATGAAGAAGGCACTTATAACACTTTCAGTAGTGAACTTGCTTGGATTTTTCTGTACTTTCTTAGTGCCAGAAACACGGGGCCGATCACTTGAAGAAATCTCAGGAGAGGATAAAGAGCACCCTGGCAATATTACTGAAGACAATGCAAATGAGACAACAAATCATGCAGAAGAGGGAACAAGAAACACTAATGTTGAAAAACCTCCACAAACCTCAATGGTTTAG 1674 0.4349 MDTNKGVLSKLDKAKTQRYHFMAVGIAGMGFFTDAYDLFCITAVIKLIGRLYYYDPNSHSPGKLPKNVNNAITGVALCGTLTGQLFFGWLGDKLGRKKVYGITLATMVGCALASGLSFGSTAKSVVASLCFFRFWLGFGIGGDYPLSAVIMSEYANQKTRGAFVAAVFAMQGVGILVAGGVAMLVSKQFLAAYPARNFAADPVQSTQPQGDFVWRIVLMFGAFPAAFTYYWRMKMPETARYTALVEGDHKKAVEDMAKVLDKDIPSEEPNTRVAATPGPSYGLFSSEFLKKHGLHLLGTTSAWFWLDIAFYSLQLTQKDIYPASGLVPKASQMNAIEEVFLLSRAMFVVALLATVPGYWFTVYFIDKIGRHKIQLVGFFVMSVCMWLLGQNYGEYRGVECSPDKKYDYCDGKHTRFVILFGVTLFFANFGPNSTTFIVPAELFPARFRSTCHGISAAAGKAGAIIGAFVVQGYTDNAENKIRGMKKALITLSVVNLLGFFCTFLVPETRGRSLEEISGEDKEHPGNITEDNANETTNHAEEGTRNTNVEKPPQTSMV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2562 557 PANTHER PHOSPHATE TRANSPORTER 6 532 - -
Ssu6g2562 557 Pfam Sugar (and other) transporter 28 517 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu6g2562 557 Gene3D MFS general substrate transporter like domains 20 534 IPR036259 -
Ssu6g2562 557 SUPERFAMILY MFS general substrate transporter 10 518 IPR036259 -
Ssu6g2562 557 MobiDBLite consensus disorder prediction 529 557 - -
Ssu6g2562 557 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 510 IPR020846 GO:0022857
Ssu6g2562 557 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 532 - -
Ssu6g2562 557 MobiDBLite consensus disorder prediction 515 557 - -
Ssu6g2562 557 CDD MFS_PhT 24 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2562 Ssu-Chr6 60311190 60312863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2562 2 519 Inorganic Solute Cotransporters AT5G43350 61.480 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2562 K08176 - gmx:100820250 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2562 6 60311190 60312863 Ssu6g2562 6 60311190 60312863 ECH