Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2561 ATGTTGGACTTGCAGACCAAATATAGACTGTACCTTGTGCTTGATTTTGTCAATGGTGGCCACCTTTTCTTTCAGCTCTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCTGTTTCTTATCTTCATGTAAATGATATAATGCACAGGGATCTTAAGCCTGAAAATATTCTTCTCGATGCAGATGGTCATGTAGTGTTAACTGATTTTGGCTTAGCTAAGCAATTCAATGAGACTGAAAGGTCAAATTCTGTGTGTGGAACTGTAGAGTACATGGCCCCTGAAATTGTTATGGGAAAAGGTCATGATAAGGCAGCTGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGGTTACAGGAAAGCCTCCTTTCTTTGGTGGAAATAGACATAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCAGCTTTTTTGTCAAATGAGGCACATTCACTGTTGAAAGGGCTGTTGCAGAAAGATTCTAGCAAACGCCTTGGCAGTGGATCCGTAGGCAGTGAGGAGATTAAAAGCCACAAGTGGTTTAAGTCAGTTAATTGGAAGAAACTGGAAGCCCGTGAAATTACGCCTAGCTTTGTCCCATATGTTGCTGGAAAGCACTGTGTTGCTAACTTTGAGGAGCGGTGGACTAGTATGCCGTTGCTGGATTCTCCAGCTGCTAGTCCCAAAAAGGATGACAATACCTTCAAAAAGTTTTCATATACTGgACTGTGA 768 0.4141 MLDLQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSYLHVNDIMHRDLKPENILLDADGHVVLTDFGLAKQFNETERSNSVCGTVEYMAPEIVMGKGHDKAADWWSVGILLYEMVTGKPPFFGGNRHKIQQKIIKDKIKLPAFLSNEAHSLLKGLLQKDSSKRLGSGSVGSEEIKSHKWFKSVNWKKLEAREITPSFVPYVAGKHCVANFEERWTSMPLLDSPAASPKKDDNTFKKFSYTGL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2561 255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Ssu6g2561 255 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 4 253 - -
Ssu6g2561 255 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2561 255 SMART pkinase_C_6 194 254 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu6g2561 255 CDD STKc_AGC 5 193 IPR045270 GO:0004674|GO:0005524
Ssu6g2561 255 Gene3D Phosphorylase Kinase; domain 1 4 236 - -
Ssu6g2561 255 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2561 255 SUPERFAMILY Protein kinase-like (PK-like) 6 239 IPR011009 -
Ssu6g2561 255 Gene3D Transferase(Phosphotransferase) domain 1 17 212 - -
Ssu6g2561 255 Pfam Protein kinase domain 5 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2561 255 PANTHER RIBOSOMAL PROTEIN S6 KINASE 4 253 - -
Ssu6g2561 255 ProSiteProfiles AGC-kinase C-terminal domain profile. 194 255 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2561 Ssu-Chr6 60308185 60310503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2561 4 253 AGC Kinase Gene Family AT3G08720 74.603 2.90e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Ssu6g2561 Pkinase 5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2561 K04688 - gmx:100803509 466.077