Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2560 ATGGTTTCCACTCAGTTCTCTGTCTTAAATGGAAATAGTTCACAGAAGCCTTTCCTGAGCCAGTTGGTTCTACCAAATGGGCCACCTGATCTTTTGCCTTCTTCGGATTGTGTGGATTTTGAATTTTCTGATGTGTTTGGTCCATCTCCTGTTGAAGCCTCAATAGCAGTAAGCTCCGAGAAGCATGAAAATTTGGTAGCTACACGAGGTCCAAGTGAAAAGATTTACAATGATCCTGCTTGCATTCACATCCGCTTTCAATCTTTATTGGCTCCCACAACCTGTATTAGTCAGTCCTTGCAGCTTAGCAAGCTCACCTTACATGAGACAGAAGATGCCTTGGATCTTGTGGAGGAGGTCTTTATAGGAATACATGAAGAACTTAAGGAACATTCTGTTACCAATGCTgcagaagagaaaaataatttacatttcaaTAATTACTGTCTGAATAATCAGACTATTGGAGTTGAggattttgaagttttgaaggtTGTTGGGCAAGGTGCTTTTGGTAAGGTGTATCAGGTGAGAAGGGCAGGCACTTCAGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATCATGCAGAGAAACCATGATGAATATGTAAAATCTGAAAGGGATATATTGACAAAAGTGGACAGCCCATTTATTGTGCGTCTCAGATACGCATTCCAAGTATTGCTTTTgcttgaatga 705 0.3773 MVSTQFSVLNGNSSQKPFLSQLVLPNGPPDLLPSSDCVDFEFSDVFGPSPVEASIAVSSEKHENLVATRGPSEKIYNDPACIHIRFQSLLAPTTCISQSLQLSKLTLHETEDALDLVEEVFIGIHEELKEHSVTNAAEEKNNLHFNNYCLNNQTIGVEDFEVLKVVGQGAFGKVYQVRRAGTSEIYAMKVMRKDKIMQRNHDEYVKSERDILTKVDSPFIVRLRYAFQVLLLLE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2560 234 Gene3D Phosphorylase Kinase; domain 1 93 230 - -
Ssu6g2560 234 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 229 - -
Ssu6g2560 234 ProSitePatterns Protein kinases ATP-binding region signature. 166 189 IPR017441 GO:0005524
Ssu6g2560 234 SUPERFAMILY Protein kinase-like (PK-like) 145 228 IPR011009 -
Ssu6g2560 234 ProSiteProfiles Protein kinase domain profile. 160 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2560 234 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 229 - -
Ssu6g2560 234 Pfam Protein kinase domain 160 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2560 Ssu-Chr6 60307360 60308064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2560 1 229 AGC Kinase Gene Family AT3G08720 47.414 2.11e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Ssu6g2560 Pkinase 7.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2560 K04688 - gmx:100803509 363.999