Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2556 ATGGGTAGACGAAAAAGTAAACCACATCGATCAGGTGGGATAATACTAGAGACAAATGCTACTGCTGAGACAGAATTGGATAAACAAAATGTTGTAGAAGGAGGGGAAGAAGCAAAGGGTGATTCTGTTGGCATTGATAAGCCTTATTTTGTTGAGGTTGACCGGTTGGGTTGGTTGTCGAGTGAACACCTTGATATTTCTGAAGTTGTTTTGAGggatttaaatttgagagaaggTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATTGGGATCCCCAGTACTCGTTAAGATTTCAGGTGTGTAACGTTAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGTAGCTAGAGTTACTGTTGACCACGTGGAAACATATACAGTGTTGTTCTCTGGTGTTTTTGATGGACCTGATGAAGGTGTCACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACATTGAGGCCGGTTCTTGGGATTAGGCTTTCTGAGGACATTCCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAGCGCCTTTGATGCATGCGAGTCGCTTCTTGATAGTTCTAGACAGCTATGGAAAAAGAGTATGATGAATGTAATGGCTTGGCTACGTCCAGAAATAATGACTTCGGAACTTAGGTATGGGTTTGGTAACTGTATGAAAATGGAAGCTGATCTGCAGACAGAGATGGCAGATGACACTTGCAAGGCCAGGAAACATGGAAGGTTTGATCCTGCAGGTTTCTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTCGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAATGGCGTGCAGCCTTCTGGATGGTAGAACGGGAGAAAGCAGTGGAAGATAGTCAGGGTGAAAGAGAAAGAACTCAGTTTCATTCTCCATTATGTATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATCAGCATCTGGAAGTGACATATTAATTGATTTACAGCCCCAAGTTAATGGAGACCAAAAAGTCACTTTGAAAAGACTTAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAACAAGACGTATAAAACTACCGTAGCTGTGAGGGATGGAGAATATGTATGTCAGATGTGCTTTGAACTAATACAGGCAACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACACATCAGGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGACACATCTTTTTCAAATACATCTCTGATGGATATCAGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGGCATGAAGGTGATCGACACTTTCTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAAGCACAAATGGTGGAGAGTAATGCTACTGCTGCCACTGAAATGGCTCTAAGACTCCATTCGAAGTATCGTTGGTGCATTACTGGGACCCCAATTCAGAGAAAGCTTGATGACTTATATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTTGATAAATACAGGTGGTGGATTGATGTTATTCGAGATCCTTATGAgAAGGGAGATGTGGGAGCTATGGAATTTACgcacaaaattttcaaacaaatcatGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTCTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGGTTCTGTCTCTTTGAATGGTTCCTCTGATCCTTTAATCACTCACACTGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTGCAGCAATCACCCATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTCTGAATGCACTTGCAGCCATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATTACTGTACAGTGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTTCCACTGGCTTCAAACTTTGCTTTAATATTGCCATCCAAACGAAAGCAGTTCTCTGGAACTTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGATCACTGTCTTGTGAAGAGGCAAAAATTAAGTGAGTGTGATGACGTAAATGTAACAGTGCCATCTGCTGAACCATCAAATGTTGCATCTAACCTTTCAGAAAATGACTTAAATGAGGATCAGgaatttgataatttatcaGCCACTTCTGTCAAATCTCTGATGGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGTAGCTCAACAGGAGTTTCAAAATTCTTACATGCAGGTCTGTAATGCATATCGTGACACCAGAACAGATCAAAATACATTTTGGTGGTTAGAGGCACTCCATCATGCTGAGCAGAACAAAGATTTCTCTACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTGCTCGTTTCCGGGGCACAAGCTCTCTGAAGTATCATATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACGATCCTAGATCGACTGTTAGAAATTGATCAGACAATggaaaaaccaaaagaagaagatattgAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGCGTTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCATTGAATCATTTCCTTTCAAAGCTATCACAATCTAATCACTGTTCTACAGTATCTGATGTTGGTCATGAAGAATCAAAGAAAAGGAATGCTGGACAAAGAGTTGTGGTTTCAAGGTCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGACAGTGTCTCAGCTGCCACCAAGCATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCACGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCCCATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACCTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTATCTGCAGCTAGCTCAAACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCAATTCGAAAGTCCAAATAGTTCTTCATTCACACACGAGACAACTGCAATGTCAAACTCTACAGAAGAGAAGGGTGCACTTGTATCTAAAACTGATGATGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCAATCACAAAATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCAATGACTGAGCAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAGAATGAATCTTCCAATTCTTCAATGCTGCATACAATTGACAGCAGTGAAAAGTGTGAAGCATCCATTAGTGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGTCTACTGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTGCTGCCAATAACATCACCTACATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGGCACAAAAGGATGTGAGGGGTCAACACAAAAATCTATTCAGGTGCTGTTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCTTTACTCAATCCAGCTGCTGAAGCTCAAGCAATCAGTCGAGTACATCGGAttggacaaaaaaataagacCCTCATTCATCGTTTCATTGTAAAAGACACAGTTGAAGAgagtatatataaattgaatagaAGCAGGAGCAATCATTCATTCATTAGTGGGAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCACTAACGATGCCAGAACGTGATGAAAATCCTAACACAAACACAAATCTAAGACACTTGCCACCATCAGTGGCCGCTGCTATAGCTGCTGAGAGGAGACTTAATGAACAAAGGACTTGA 5016 0.3999 MGRRKSKPHRSGGIILETNATAETELDKQNVVEGGEEAKGDSVGIDKPYFVEVDRLGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYWDPQYSLRFQVCNVSNVLGRIKLGHWPVLPYTDIHLEFVARVTVDHVETYTVLFSGVFDGPDEGVTGLLHLASLKFVTLRPVLGIRLSEDIPSLRVRVEVLKSAFDACESLLDSSRQLWKKSMMNVMAWLRPEIMTSELRYGFGNCMKMEADLQTEMADDTCKARKHGRFDPAGFYEAIKPSKAEPMLEDDIPELLPKLRPYQWRAAFWMVEREKAVEDSQGERERTQFHSPLCIPVDFLDTSSQMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGSDILIDLQPQVNGDQKVTLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCENKTYKTTVAVRDGEYVCQMCFELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRDTSFSNTSLMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFDKYRWWIDVIRDPYEKGDVGAMEFTHKIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATLLYSEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLASNFALILPSKRKQFSGTSEFKMTKRHLIVKVDHCLVKRQKLSECDDVNVTVPSAEPSNVASNLSENDLNEDQEFDNLSATSVKSLMAECEDSKQKYLSVFSSKLSVAQQEFQNSYMQVCNAYRDTRTDQNTFWWLEALHHAEQNKDFSTELIRKIEEAISGTSNNSKSSRIAARFRGTSSLKYHIQTGLDQLEASRKTILDRLLEIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSNHCSTVSDVGHEESKKRNAGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATKHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELSAASSNFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLQFESPNSSSFTHETTAMSNSTEEKGALVSKTDDETCPICQEKLGNHKMVFQCGHVTCCKCLFAMTEQRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDAQNESSNSSMLHTIDSSEKCEASISVKGSYGTKIEAVTRRILWVKSTDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFRGKQNGTKGCEGSTQKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPERDENPNTNTNLRHLPPSVAAAIAAERRLNEQRT 1671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2556 1671 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Ssu6g2556 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 481 IPR013083 -
Ssu6g2556 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1342 1427 IPR013083 -
Ssu6g2556 1671 Gene3D - 482 709 IPR038718 -
Ssu6g2556 1671 SMART ring_2 1358 1405 IPR001841 -
Ssu6g2556 1671 Gene3D - 1428 1645 IPR027417 -
Ssu6g2556 1671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1626 IPR001650 -
Ssu6g2556 1671 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Ssu6g2556 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 686 IPR027417 -
Ssu6g2556 1671 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Ssu6g2556 1671 SUPERFAMILY RING/U-box 1353 1410 - -
Ssu6g2556 1671 MobiDBLite consensus disorder prediction 1326 1348 - -
Ssu6g2556 1671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1652 - -
Ssu6g2556 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1627 IPR027417 -
Ssu6g2556 1671 SMART PHD_3 414 482 IPR001965 -
Ssu6g2556 1671 CDD DEXQc_SHPRH 358 688 - -
Ssu6g2556 1671 SMART ultradead3 285 658 IPR014001 -
Ssu6g2556 1671 CDD SF2_C_SNF 1449 1586 - -
Ssu6g2556 1671 Gene3D - 346 397 IPR038718 -
Ssu6g2556 1671 CDD PHD_TCF19_like 416 481 - -
Ssu6g2556 1671 Pfam Helicase conserved C-terminal domain 1453 1575 IPR001650 -
Ssu6g2556 1671 MobiDBLite consensus disorder prediction 1326 1347 - -
Ssu6g2556 1671 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Ssu6g2556 1671 SMART helicmild6 1483 1575 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2556 Ssu-Chr6 60223394 60239768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2556 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.438 1.40e-34 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu6g2556 SNF2_N 8e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2556 K15710 - gmx:100776659 3075.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2556 6 60223394 60239768 Ssu6g2556 6 60223394 60239768 ECH