Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2554 ATGGAAGCACATCCAAACGCGGCCTCCATGCTGAGAAGCAGGAGTACAGTACCTCCTCCTCCATCATTGCTAGCCCTGAGTACGAGGCTGCCGTCACCGTTACCGTCACCGTCCATCACCGTCTCGGAACATACACTTTACTGTTCTCGAAACCCGAAACCCTCATTCCACCGCTTCCCTCTCTTCTTCAATCCTCACACTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACTCTGGGCTCACCGTTCCCATTTCGGGCCCACCCGAGCCCGAACCCGATTCCCCTCACACTCTTGTCGTTGTTTCCTTCTACAAGTTTGCGGATTTCCCTGACCACGCCCTCATGCGAAACCCCTTGAAGCAACTCTGTCAGCGCCTGCGTGTTTCAGGTGGAATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATATGTGGGACTCGGGAGTCGGTGGAGGAAGTTCTTGCGTTCATGGAAAGCGATGATCGATTGAAGGGGCTAAGGCGAGTGGAGTCGCCTGTTAGTCCTGAGGAGGAGGCTATCCATCATGGGCATAGCGCCGCCTCTCCTCTTGCTGCTGGGGAAGACGCGCCCTTCCGGTGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTCACTCTTGGGATGCCTACTGTGTCGCCTATTGAAAGGGTTGGGAAGTATGTTGGTGCAGAAGGGTGGAACGCTTTGATTAGTGATCCAGATACAGTGGTAATTGATGTGAGGAATAACTATGAAACCAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCTTGTACTTCATCATTTCGTGAATTTCCATCTTGGGTGGAGGAGCATTTCCAGCTTACCAAAACAGATGGTGGTGAGCATCCAAAAGTCGAGGTAAACAATTCAGTCCAAACCGctgaaaaagaaatggagaatCAAAAACAACATATGCCACGTGTTGCAATGTATTGCACTGGAGGAATTCGATGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTATCACCTGGAAGGTGGAATTCTAAAATATCTTGAGGAGGTTCCAGAGACAAAGAGCCTCTGGGAAGGAGAGTGCTTTGTTTTTGACAAACGAGTCTCTGTGGAGCATGGTTTGGTGCCAGGAAATTTCAAGCTCTGCTATGGTTGTAAGCAGCCTGTGAGTGATGCCGACATGGAAGCCCCAGAATTTGAATATGGAGTCTCTTGTCCTCACTGTTTTTCACTGAAATCAGATGAAGAGAAGGAGAGGGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGCGGTCCAGATAAGGGTCGCCGGCCAACTCATGAACCGGAAAGCGCTAGCAGAAAACCAAACCAGCTTTCACGTTCTATTTAA 1407 0.4861 MEAHPNAASMLRSRSTVPPPPSLLALSTRLPSPLPSPSITVSEHTLYCSRNPKPSFHRFPLFFNPHTLQTMTLSKCFSHSGLTVPISGPPEPEPDSPHTLVVVSFYKFADFPDHALMRNPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEEVLAFMESDDRLKGLRRVESPVSPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGAEGWNALISDPDTVVIDVRNNYETRIGKFKGAVDPCTSSFREFPSWVEEHFQLTKTDGGEHPKVEVNNSVQTAEKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFKEVYHLEGGILKYLEEVPETKSLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFSLKSDEEKERARARQRQFERWGIIGGPDKGRRPTHEPESASRKPNQLSRSI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2554 468 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 98 449 - -
Ssu6g2554 468 MobiDBLite consensus disorder prediction 427 468 - -
Ssu6g2554 468 Gene3D - 91 214 - -
Ssu6g2554 468 ProSiteProfiles Rhodanese domain profile. 241 363 IPR001763 -
Ssu6g2554 468 Coils Coil 295 315 - -
Ssu6g2554 468 CDD RHOD_YceA 228 356 - -
Ssu6g2554 468 SMART rhod_4 231 360 IPR001763 -
Ssu6g2554 468 MobiDBLite consensus disorder prediction 442 456 - -
Ssu6g2554 468 Pfam Rhodanese-like domain 239 356 IPR001763 -
Ssu6g2554 468 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 98 449 IPR020936 -
Ssu6g2554 468 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 210 389 IPR036873 -
Ssu6g2554 468 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g2554 468 Hamap tRNA uridine(34) hydroxylase [trhO]. 98 400 IPR020936 -
Ssu6g2554 468 Pfam UPF0176 acylphosphatase like domain 101 213 IPR040503 -
Ssu6g2554 468 Gene3D - 215 396 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2554 Ssu-Chr6 60216918 60220821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2554 99 468 Sulfurtransferasese or Rhodanese AT2G40760 75.000 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2554 - - gmx:100784854 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2554 6 60216918 60220821 Ssu6g2554 6 60216918 60220821 ECH