Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2553 ATGATGTTGTTTCCTTATGGAAGTCAAGATACACTTGCCACTATAGCATCACTTGGTTATGTACTATTTGTCTTTGAGAATGGTGTAAAAATGGATTATAGCATGATCACTAGAGCAGGAAAAAAAGGATGGGTCATATCCCTTGTTGGGTTGGCATTACCTCTGCTAATTGGTTCTACACATCTACAAAACCTTTCTGCATTTTTAACCCAAGGTGTAGATGACAAAGATCATTCAGCTATTGTTATATTGATGACACAGAACATGAATTCATTTGCAGTGATTGCTTCCATCCTCAATGATCTTCAAATCCTAAACTCTGAACTTGGAAGACTGACATTATCTTGTGCACTGGTGGGTGACATGCTAAGTAATATTCTTGTAATTTCAACTGCGGTCTTTGATAACGAGTCATCTACTCAAATGATAGCATACACATCTTCACTATATTTCAAGCTACCGCTCAAGGATGCCGTGTCTCTTGCCCTCCTTCTAAATTGCAAAGGTGTTATGGAAATAAGCATGATATCAATATGCCGAGATTACACCGTGATTCTAACAATAATCATGATGACAAGTAGCATTGTGCATCTGTTGGTGAAACGTTTATATGATCCTTCAAGGAAATATATTGGCTACCAAAAAAGGgacatttttagtttaaaaccCAACTCAGGTCTTCGGATACTAGTATGCATTCATAAACAACATCATACAATCCCTATCACGAGAGCCCTTGATCTATGTAATCCTAGACTAGAAGATCCTAGCAACGTGGATGTTTTGCATCTAATTGAACTAGTAGGGCGTTCCTCCCCTATTTTTATCTCTCACAGGATGAAAAAGGGTGTTCCTTCTCGCATGCGAAACTCCTACTCTGAGGATATCATCCTTTCTTTCAAACTATGTGAAGATGAAAAGCAAGGTGCAACATCAATAAACCCCTATACAGCCATATCTCCTCCCACATTGATGCATGAAGACGTGTGCTACCTTGCATTGGATAGAGTTGCATCAATTATTATTCTTCCTTTTCATCGAAAATGGTCCATTGATGGTAAAATTGAACATGAGGACAAGACTATCAGGTCACTAAATTGTAAGGTCATGGAAAAGGCTCCATGCTCGGTTGGAATATTAGTGAGTCGTTTTGTTCACCAAAGAGATTCACCACTTCGGTTAGCCATGATCTTTTTGGGTGGAAATGATGATCGGGAGGCTTTGTGCTTAGCTAATCGAGCAGCCAAAGACTCTAGTGTTAACCTTGTGGTATATCACATTACAACCAATAACAATAAGAATGATATTCAAGACATTGACACCATGCTTGATCTTGCAATGTTAAAAGAAGCTAAGAAAGAATACTCTAGTTCGAAAAATGTTATTCGTAAGGAAATAGTAGTAGAGGGTGGACCCCAAATTGCTTCTGTTCTTCGTCAAATGGTAGATgagcatgatttttttttatag 1470 0.3748 MMLFPYGSQDTLATIASLGYVLFVFENGVKMDYSMITRAGKKGWVISLVGLALPLLIGSTHLQNLSAFLTQGVDDKDHSAIVILMTQNMNSFAVIASILNDLQILNSELGRLTLSCALVGDMLSNILVISTAVFDNESSTQMIAYTSSLYFKLPLKDAVSLALLLNCKGVMEISMISICRDYTVILTIIMMTSSIVHLLVKRLYDPSRKYIGYQKRDIFSLKPNSGLRILVCIHKQHHTIPITRALDLCNPRLEDPSNVDVLHLIELVGRSSPIFISHRMKKGVPSRMRNSYSEDIILSFKLCEDEKQGATSINPYTAISPPTLMHEDVCYLALDRVASIIILPFHRKWSIDGKIEHEDKTIRSLNCKVMEKAPCSVGILVSRFVHQRDSPLRLAMIFLGGNDDREALCLANRAAKDSSVNLVVYHITTNNNKNDIQDIDTMLDLAMLKEAKKEYSSSKNVIRKEIVVEGGPQIASVLRQMVDEHDFFL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2553 489 Gene3D - 2 153 IPR038770 -
Ssu6g2553 489 PANTHER CATION/H + ANTIPORTER 141 489 - -
Ssu6g2553 489 PANTHER CATION/H + ANTIPORTER 2 138 - -
Ssu6g2553 489 PANTHER CATION/H+ EXCHANGER 3 141 489 - -
Ssu6g2553 489 PANTHER CATION/H+ EXCHANGER 3 2 138 - -
Ssu6g2553 489 Pfam Sodium/hydrogen exchanger family 10 132 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2553 Ssu-Chr6 60205346 60207117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2553 121 489 Antiporter Super Family AT3G44900 36.761 3.16e-77 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2553 - - gmx:100784321 569.696