Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g2550 | atgacatgcaTGGGGCATATTCCTGAATTGTTGTTGCGCAGGAGGACTGCATCGGCATGGACCATACTCTCGTGCACCACTGATGACAATCATGCATGGAGGAAGTATGGGCAAAAGGAAATCCTGAATTCTGAATTTCCTAGgAGTTACTATAGGTGCAGTCACAAGTATGATCAAGGTTGCCGAGCAACCAAACAGGTGCAGCGGGATCAAGACAATCCGGATATGTACCGAACTACGTACATTGGCATTCACACATGCAATGCCACCCCCAAGGCTACACATTCGGCCACAGATTCTACTACTTGGGAATCATATCTTTTGAATTCTGATCATGGCTCTAAGGTACCAAATGTACAGGATCACCACATTAGCTCGCCAAGCCTAATTGAAAAACAAGAATTTCCCAAAGAAGACTCACCGAGTGATGTTACAGATCACAAGTTGGATCCTACCCTGTGGTCAGATTTGAAGGATTTTGAACCATCCAAGCCTGCCATTATGACCTTAAAGATGGAATCTGATAATAATGCAGATAATGTGTATTCATGTATAGACTCTCAACGTCTGGACATGGATTTTGGGGTGGCATCTGTTCATTTTGGCACCGACTTCCGCTTTGACGAAAGTCAGTTGCTTTAA | 642 | 0.433 | MTCMGHIPELLLRRRTASAWTILSCTTDDNHAWRKYGQKEILNSEFPRSYYRCSHKYDQGCRATKQVQRDQDNPDMYRTTYIGIHTCNATPKATHSATDSTTWESYLLNSDHGSKVPNVQDHHISSPSLIEKQEFPKEDSPSDVTDHKLDPTLWSDLKDFEPSKPAIMTLKMESDNNADNVYSCIDSQRLDMDFGVASVHFGTDFRFDESQLL | 213 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g2550 | 213 | SMART | WRKY_cls | 27 | 89 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2550 | 213 | Pfam | WRKY DNA -binding domain | 28 | 88 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2550 | 213 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 13 | 199 | IPR044810 | GO:0003700 | |
Ssu6g2550 | 213 | SUPERFAMILY | WRKY DNA-binding domain | 25 | 89 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2550 | 213 | PANTHER | WRKY FAMILY TRANSCRIPTION FACTOR | 13 | 199 | - | - | |
Ssu6g2550 | 213 | MobiDBLite | consensus disorder prediction | 132 | 150 | - | - | |
Ssu6g2550 | 213 | Gene3D | WRKY domain | 13 | 82 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2550 | 213 | ProSiteProfiles | WRKY domain profile. | 28 | 90 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu6g2550 | 213 | MobiDBLite | consensus disorder prediction | 129 | 150 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g2550 | Ssu-Chr6 | 60169258 | 60171321 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g2550 | 13 | 114 | WRKY Transcription Factor Family | AT3G56400 | 50.000 | 1.01e-29 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Ssu6g2550 | WRKY | 2.4e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g2550 | - | - | gmx:100796071 | 307.76 |