Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2550 atgacatgcaTGGGGCATATTCCTGAATTGTTGTTGCGCAGGAGGACTGCATCGGCATGGACCATACTCTCGTGCACCACTGATGACAATCATGCATGGAGGAAGTATGGGCAAAAGGAAATCCTGAATTCTGAATTTCCTAGgAGTTACTATAGGTGCAGTCACAAGTATGATCAAGGTTGCCGAGCAACCAAACAGGTGCAGCGGGATCAAGACAATCCGGATATGTACCGAACTACGTACATTGGCATTCACACATGCAATGCCACCCCCAAGGCTACACATTCGGCCACAGATTCTACTACTTGGGAATCATATCTTTTGAATTCTGATCATGGCTCTAAGGTACCAAATGTACAGGATCACCACATTAGCTCGCCAAGCCTAATTGAAAAACAAGAATTTCCCAAAGAAGACTCACCGAGTGATGTTACAGATCACAAGTTGGATCCTACCCTGTGGTCAGATTTGAAGGATTTTGAACCATCCAAGCCTGCCATTATGACCTTAAAGATGGAATCTGATAATAATGCAGATAATGTGTATTCATGTATAGACTCTCAACGTCTGGACATGGATTTTGGGGTGGCATCTGTTCATTTTGGCACCGACTTCCGCTTTGACGAAAGTCAGTTGCTTTAA 642 0.433 MTCMGHIPELLLRRRTASAWTILSCTTDDNHAWRKYGQKEILNSEFPRSYYRCSHKYDQGCRATKQVQRDQDNPDMYRTTYIGIHTCNATPKATHSATDSTTWESYLLNSDHGSKVPNVQDHHISSPSLIEKQEFPKEDSPSDVTDHKLDPTLWSDLKDFEPSKPAIMTLKMESDNNADNVYSCIDSQRLDMDFGVASVHFGTDFRFDESQLL 213
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2550 213 SMART WRKY_cls 27 89 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2550 213 Pfam WRKY DNA -binding domain 28 88 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2550 213 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 199 IPR044810 GO:0003700
Ssu6g2550 213 SUPERFAMILY WRKY DNA-binding domain 25 89 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2550 213 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 13 199 - -
Ssu6g2550 213 MobiDBLite consensus disorder prediction 132 150 - -
Ssu6g2550 213 Gene3D WRKY domain 13 82 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g2550 213 ProSiteProfiles WRKY domain profile. 28 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g2550 213 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu6g2550 Ssu-Chr6 60169258 60171321 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2550 13 114 WRKY Transcription Factor Family AT3G56400 50.000 1.01e-29 110
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g2550 WRKY 2.4e-25 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2550 - - gmx:100796071 307.76