Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2547 ATGCCGAATCCCGAGGGTCACCGTAGCCAGCCACACCGGTCCAGGGCCCGACCGTCCACGTCAGCGCCGGTTCGAGCCCCGGTCCGGGCCCGGGTTTCGCTGAGGCAGTTGCTGCGGGTGGCGTCGGTAGCGAGCGGTATTCAGTTTGGTTGGGCCCTGCAGCTCTCTCTGCTCACGCCCTATGTGCAGCAGCTGGGGATCCCTCACCAATGGGCCAGCATCATCTGGCTCTGCGGCCCGGTCTCGGGCCTGTTCGTGCAGCCCCTGGTGGGCCACATGAGCGACCGCTGCACCAGCCGCTTCGGCCGCCGCAGGCCCTTCATCCTCGCCGGCGCCGCTGCGATCGTCGTCGCCGTCGTCATCATCGGCTACGCCGCCGACATCGGTTGGCTCCTCGGCGACACCGAGGCCTACCGCCCCGCCGCCATAGCCGTCTTCATCATCGGGTTTTGGATCCTCGACGTCGCCAACAACGTCACTCAAGGTCCCTGTCGAGCCTTGCTCGGTGATCTCACTAGCAAGGATCCTCGAAGGACACGTGTTGCAAATGCTTATTACTCGCTGTTTATGGCCATTGGTAACATTCTTGGCTATGCAACTGGATCATACAGTGGTTGGTACAAGGTTTTTACTTTTGCACTTTCCCCTGCTTGCACAGTTAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTTGACATTGCTTTCATTGCGGTCACAACATACATCAGCATCATGGCAGCTCATGAAGTGCCTCTAAATTTAAGTGGGGCAACCCATGCCGAAGCGGGGGCAGGGGAGTCAGTTAGTGCAGAAGAAGCTTTCATGTGGGAACTGTTTGggacattcaaatatttttcaaccCCTGTATGGATAATTCTGTCTGTTACTGCACTGACATGGATTGGGTGGTTCCCATTTACTCTCTTTGATACTGATTGGATGGGTCGAGAGATTTATGGCGGTGATCCAAATCAAGGCCTTATTTATGATACTGGAGTTAGAATAGGAGCACTTGGTTTGTTGCTTAATTCAGTTGTTCTTGCATTAACATCATTGTTCATGGAGAGGCTATGCAGGAAGAGGGGGGCTGGTTTTGTGTGGGGAATCTCAAATATCCTGATGGCCATTTGCTTTCTTGCAATGCTAGTAGTAACCTACGTGGCAAATAACATGGGCTATGTGGGCAAAGATCTACCGCCAATTGGCATTGTGATAGCTGCGTTgattatctttaccattcttgggTTTCCACTGGCAATCACATACAGTGTTCCCTATGCCTTAGTTTCCACACATATTGAGTCATTGGGACTCGGCCAAGGGTTATCAATGGGTGTCCTAAATCTGGCAATAGTGATCCCACAGATAATAGTGTCCCTGGGAAGTGGACCATGGGATCAGCTATTTGGTGGAGGAAACTCCCCAGCCTTTGCTGTGGCAGCTGTTTCAGCCCTTATCAGTGGACTCATGGCTGTCTTGGCTATTCCTCGATCTGGTGCTCAAAAGGCTCGAGGCCATGTATGA 1524 0.5171 MPNPEGHRSQPHRSRARPSTSAPVRAPVRARVSLRQLLRVASVASGIQFGWALQLSLLTPYVQQLGIPHQWASIIWLCGPVSGLFVQPLVGHMSDRCTSRFGRRRPFILAGAAAIVVAVVIIGYAADIGWLLGDTEAYRPAAIAVFIIGFWILDVANNVTQGPCRALLGDLTSKDPRRTRVANAYYSLFMAIGNILGYATGSYSGWYKVFTFALSPACTVSCANLKSAFFLDIAFIAVTTYISIMAAHEVPLNLSGATHAEAGAGESVSAEEAFMWELFGTFKYFSTPVWIILSVTALTWIGWFPFTLFDTDWMGREIYGGDPNQGLIYDTGVRIGALGLLLNSVVLALTSLFMERLCRKRGAGFVWGISNILMAICFLAMLVVTYVANNMGYVGKDLPPIGIVIAALIIFTILGFPLAITYSVPYALVSTHIESLGLGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNSPAFAVAAVSALISGLMAVLAIPRSGAQKARGHV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2547 507 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g2547 507 Gene3D MFS general substrate transporter like domains 33 251 IPR036259 -
Ssu6g2547 507 Gene3D MFS general substrate transporter like domains 286 503 IPR036259 -
Ssu6g2547 507 PANTHER SUGAR TRANSPORTER 9 505 - -
Ssu6g2547 507 Pfam MFS/sugar transport protein 52 435 - -
Ssu6g2547 507 CDD MFS_SLC45_SUC 37 493 - -
Ssu6g2547 507 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 9 505 - -
Ssu6g2547 507 TIGRFAM GPH_sucrose: sucrose/H+ symporter 32 498 IPR005989 GO:0005887|GO:0008515|GO:0015770
Ssu6g2547 507 SUPERFAMILY MFS general substrate transporter 36 498 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2547 Ssu-Chr6 59999613 60007983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2547 8 502 Sucrose Transporter Gene Family AT1G09960 69.556 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2547 K15378 - gmx:100820483 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2547 6 59999613 60007983 Ssu6g2547 6 59999613 60007983 ECH