Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2543 ATGTCCAAGCCACTGCTAGGCAGAGGTGAAGAGGAAGGTCAAAGCAATGTCACTTTGTTGGTTTCTTCCTCAGCTACCATGGAAAGTGTGTGCCTGAATAGCTCAAAATTGAAAGAGCGCAACTACATGGGGTTATCTGATTGTTCATCAGTGGACAGCTCCGCGCCGAGCTTCCCAGATGAGAGTAAAAGTAATCTGAACCTTAAAGCTACTGAGCTCAGACTGGGGCTTCCGGGATCACAGTCTCCCGAACGAGATTCAGatctttgcttgagaagttcaATTCAGTTTGATGAAAGGCCACTCTTTCCTTTGCATCCTGCAACTGATGATCATCATTCCTCATCAAAGCCTGCTGTTTTGGGTAACAAAAGAGGGTTCTCAGATGTCATGAGTGGATTCTTAGAGGAGAAATTACTTGTTAGTTCTGAGGTCATCAACACAATATTGTCACCCAGGCCTTCTCCTAATGTGGGGTTGAAACCAAGCTCTATGCTTGAGAATGTTGGGGCTCAGCAAGCCAAAGCCAAAGAATTAGTAGCAGCCAAGGTTGGTCTTGAGAGGTCTCATGCTGCCAATGAAAGCAGACCAAGTCTTAATGGTTCTGCAAATAACAATAGCAGTGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAAAATTCATTGGCCACTGCTTCAAAGAATGTTGAAGAAGTAGATGGAAAAGCGGGGTCTGGTGCACTGCTTGTAAAGGTCAGTATGGATGGTGCTCCCTACTTAAGAAAAGTAGACTTGAAGAATTACTCTGTGTATACCGAACTATCTTCTGCTCTGGAGAATATGTTCAGCTGTTTTACCATAGGTCCTTGTGGATCTCATGGAAATCTGGGGAGGGAGATGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTATTACATACGAGGATAAAGATGGCGACTGGATGCTAGTGGGAGATGTTCCCTGGGATATGTTTACTGATACGTGTAGGAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGTCTAGAGCTGTTGAAAAAAGTAAGAGCAGGAACTAGGCAGTATCAAGCATCTCATCACACTATCCATCTAACTGCTTGTGGGGTTAAAAAGCTTTCTGAGCTATGTGGGGCAGCAACCCTAGACCATAATGGCCTGGAAGCAGAACTGAAGGCATGTTGGACCGGATAG 1233 0.4461 MSKPLLGRGEEEGQSNVTLLVSSSATMESVCLNSSKLKERNYMGLSDCSSVDSSAPSFPDESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSIQFDERPLFPLHPATDDHHSSSKPAVLGNKRGFSDVMSGFLEEKLLVSSEVINTILSPRPSPNVGLKPSSMLENVGAQQAKAKELVAAKVGLERSHAANESRPSLNGSANNNSSAPATKAQVVGWPPIRSFRKNSLATASKNVEEVDGKAGSGALLVKVSMDGAPYLRKVDLKNYSVYTELSSALENMFSCFTIGPCGSHGNLGREMLNETKLKDLLHGSEYVITYEDKDGDWMLVGDVPWDMFTDTCRRLRIMKSSDAIGLELLKKVRAGTRQYQASHHTIHLTACGVKKLSELCGAATLDHNGLEAELKACWTG 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2543 410 ProSiteProfiles PB1 domain profile. 248 350 IPR000270 GO:0005515
Ssu6g2543 410 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 361 IPR003311 GO:0005634|GO:0006355
Ssu6g2543 410 MobiDBLite consensus disorder prediction 190 214 - -
Ssu6g2543 410 Gene3D - 243 361 - -
Ssu6g2543 410 Pfam AUX/IAA family 71 356 IPR033389 -
Ssu6g2543 410 PANTHER AUXIN-INDUCED PROTEIN 23 361 - -
Ssu6g2543 410 SUPERFAMILY CAD & PB1 domains 246 349 - -
Ssu6g2543 410 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2543 Ssu-Chr6 59804326 59807585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2543 251 364 B3 DNA Binding Superfamily AT2G46530 32.456 2.72e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu6g2543 AUX_IAA 9.6e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2543 K14484 - gmx:100815447 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2543 6 59804326 59807585 Ssu6g2543 6 59804326 59807585 ECH