Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2541 atggagcCCCATGACCATGATTTCTTGGAGGAATTAATGGCTCTAAGAAGAGAACCATGGGATACCAATCCATGCTCAGTAGAAAACCAGCTTTTCTCTAATGGCTGGAGTTTTGATTGTTATGATCAAAACTCTCATGCTTTTCCTCCGAATTCTTTCTCTTGCCAAGAAGTTACTCAAAGTTATAACAACAACCACTACACCTTCAATGAAATCTATAGTTCCTTACTTGATGAATTCTCTGCACCCCAAATTATAGATTCATCCAATAACACCCATGATACTCCACATAATACCCCTCCATTTCTGGCTCAAGAAGATTATCCATTGTCCATGGTGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGTTTCATTGTTTGGACCTTCAAACCACATACAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTGTTTCCAACACAGCTTCATTGGTGGAAAGAAAGAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGcagagaggagaagaagaaagagattaaACGACAGGCTTTCCATGCTAAGATCAATTGTCCCTAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACCATCGACTATATGAAAGAGCTCTTGGAAaagattaataatttgaaacaagAAATAGAAACAGATTCCAACATGGCCAGCATTTTCAAGGATGTAAAGCCAAACGAAATCTTAGTGAGAAATTCTCCAAAGTTTGATGTGGAAAGGAGAAATGTCAACACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGCTGTCTACAGTAAACACCTTGGAAACCTTAGGCCTTGAGATCCAAGAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGCTCAGAGGACTTGCAGCACAAGACAATTCTGAGTTCCGAAGATATAAAGCAAGCACTATTTAGAAGCGCAGGGTATGGAGGACGATGTTTGTAA 1002 0.3912 MEPHDHDFLEELMALRREPWDTNPCSVENQLFSNGWSFDCYDQNSHAFPPNSFSCQEVTQSYNNNHYTFNEIYSSLLDEFSAPQIIDSSNNTHDTPHNTPPFLAQEDYPLSMVEEEDPGLLGEEFHCLDLQTTYKMEPSHSPEMPVSNTASLVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLKQEIETDSNMASIFKDVKPNEILVRNSPKFDVERRNVNTRVEICCAGKPGLLLSTVNTLETLGLEIQECVISCFNDFTMQASCSEDLQHKTILSSEDIKQALFRSAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2541 333 SMART finulus 170 219 IPR011598 GO:0046983
Ssu6g2541 333 Gene3D - 172 246 IPR036638 GO:0046983
Ssu6g2541 333 PANTHER DNA BINDING PROTEIN 4 333 - -
Ssu6g2541 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 333 - -
Ssu6g2541 333 Coils Coil 203 230 - -
Ssu6g2541 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Ssu6g2541 333 CDD ACT_UUR-ACR-like 259 300 - -
Ssu6g2541 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
Ssu6g2541 333 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2541 Ssu-Chr6 59755694 59757341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2541 155 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.835 1.19e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g2541 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2541 - - gmx:100814388 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2541 6 59755694 59757341 Ssu6g2541 6 59755694 59757341 ECH