Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2539 ATGGGTTCCCGCGACTCCTCCCCTCGCTCCACCGACAACCCCCCTTCCTTCGAGGACCCCCCTCCCTCCAAGGTCAAGCTCATGTGCAGCTTCGGCGGCCGAATCCAGCCCCGCCCCCACGACAACCACCTCACCTACGTCGCCGGCGACACCAAGATCCTCGCCGTCGACCGCCACGTCAAGTTCCCCGCCCTCCTCGCCAAGCTCTCCGCCCTCGCCAGCTCCCCCAACAACACCCTCCTCCTCAAGTACCAACTCCCCGGCGAAGACCTCGACGCCCTCATCTCCGTCACCAACGACGAAGACCTCCACCACATGATGCTCGAGTACGATCGCCTGTGCCGCGCCTCACCTAGACCCGCACGCTTGCGCCTCTTCCTCTTCCCCCTCCACACCGCCACCAATTTCGCAACCGCCGAATCCAAACCCGAGCGCCAGTGGTTCGTCGACGCTCTCAACTCCGTTCAGGTCCCGCTTCCACAAGGTTCCCCTCCGCCTCCTCCGCCGCCGAATCCGGATTTTCTGTTCGGACTGGACAAGCCGGCCGTTCCGGATGCCCGCCGAGGGAATCGGCGCCGGAGTCGGAGGTTAGAGAAACCGAACCCGAACCTGAGTTTCGGAGGTTGCAGATTGGGAACAATAATGAGCAGGTTTCGCAGCGGAAGGGTTTACGGCGTGGACTCTTTCGCTCAGAAGAATGCGGAGAATGTGACGCCGTTAGTGGCGCACGCGCAAGTTCATTCAGGAACTGTTCCCGGAACGGTGTCGTTCTTGCAGGAGAGGAACAGCGGGGGTTATTCGCTGGCGGTGCCTACGACGAGGAATGAGATTTATCTCATTCAGACGCCTTCCGGAATCTTCCAAGCGGTGCGGCCCGTGGCTGGACCGGTGGGTCAACCGGTTTATCTGGTTCACGCACCCGGTTCGGAGGTTGGCATGGCGCCGGAGCGTGGGTATTCGGCGGCGGGACGCGGCGGCGCGCGGTGGTGA 990 0.6293 MGSRDSSPRSTDNPPSFEDPPPSKVKLMCSFGGRIQPRPHDNHLTYVAGDTKILAVDRHVKFPALLAKLSALASSPNNTLLLKYQLPGEDLDALISVTNDEDLHHMMLEYDRLCRASPRPARLRLFLFPLHTATNFATAESKPERQWFVDALNSVQVPLPQGSPPPPPPPNPDFLFGLDKPAVPDARRGNRRRSRRLEKPNPNLSFGGCRLGTIMSRFRSGRVYGVDSFAQKNAENVTPLVAHAQVHSGTVPGTVSFLQERNSGGYSLAVPTTRNEIYLIQTPSGIFQAVRPVAGPVGQPVYLVHAPGSEVGMAPERGYSAAGRGGARW 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2539 329 MobiDBLite consensus disorder prediction 158 202 - -
Ssu6g2539 329 Gene3D - 45 129 - -
Ssu6g2539 329 Pfam PB1 domain 41 129 IPR000270 GO:0005515
Ssu6g2539 329 PANTHER OS05G0427100 PROTEIN-RELATED 3 190 - -
Ssu6g2539 329 CDD PB1_UP2 28 128 - -
Ssu6g2539 329 MobiDBLite consensus disorder prediction 159 175 - -
Ssu6g2539 329 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 3 190 - -
Ssu6g2539 329 SUPERFAMILY CAD & PB1 domains 40 133 - -
Ssu6g2539 329 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g2539 329 SMART PB1_new 39 130 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2539 Ssu-Chr6 59677791 59678809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2539 22 155 MAP Kinase Kinase Kinase AT5G57610 43.972 2.25e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2539 - - gmx:102666247 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2539 6 59677791 59678809 Ssu6g2539 6 59677791 59678809 ECH