Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2536 ATGGTGTTGAGGAAAGTGGGCAGGTACGAGATTGGAAGGACCGTTGGAGAGGGAAACTTTGCGAAGGTAAAGTTCGCTCAGAACACAGAAACTGGCGAGAGTGTCGCCATGAAGGTGCTCGACCGTAGCGCCATCATCAAGCACAAAATGGTCGACCAGATCAAGAGGGAAATTTCTAATATGAAGCTAGTCAGACATCCGTATGTTGTTCGTCTGCACGAGGCATCGAGCCGTACtaagatttatattatattggaGTTTATTACATGTGgtgaattatttgataaaattGTAAACCATGGGCGTCTTAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTTCCAGAACAAGGGGTCAGTATGCTTCGGACAACTTGTGGGACTCCTAATTATGTAGCTCCTGAGGTACTCAGTCACAAGGGTTATAATGGTGCTCCAGCAGATGTTTGGTCCTGTGGAGTTATCCTCTACGTTCTAATGGCTGGATATCTTCCCTTTGACGAACTTGATCTAACTACGTTGTACAGTAAGATTGAGAAAGCACAGTTTTCGTGCCCTCCTTGGTTTCCTGTGGGAGCAAAGTCTTTAATACAGAGAATTCTGGACCCAAATCCTGAACATCGTATAACCATTCAGCAGATAAGGAATGATGAGTGGTTTCAAAAGGGATATGTTCCGGTCAGTCTCCTCGAGCATGAAGATGTAAATCTGGATGATGTAAATGCTGCATTTGACAATGTTGAGGATCAGAGCACTAATCAGCAATGTGAGAATGACGACATGGGTCCTCTAACTCTTAATGCATTCGAcatgataattttatctcaaggCTTAAACCTTGCAACCCTATTTGATCGTGGACAGGACGATATGAAATACCAAACACGCTTCATCAGTCAAAAGCTACCAAACGTGGTTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACGCATATTAGCAACTATAAGATGAGAATAGAGGGTATTTCAGCAAATAAGGCTTCTTATTTCTCAGTTATACTGGAAGTTTTTGAAATTGCTCCTACATTTTTCATGGTGGACATTCAGAAAGCAGCTGGAGATGCAGGTGAATATCTCAAGTTTTACAAGAATTTTTCTAGCAATCTTGAGGATATCATGTGGAAACCACCCCATGAAACAAGCAAATTAAGGATCTCCAAGACTAAATGCAAAGGGCAGTAA 1338 0.3961 MVLRKVGRYEIGRTVGEGNFAKVKFAQNTETGESVAMKVLDRSAIIKHKMVDQIKREISNMKLVRHPYVVRLHEASSRTKIYIILEFITCGELFDKIVNHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSAFPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGAPADVWSCGVILYVLMAGYLPFDELDLTTLYSKIEKAQFSCPPWFPVGAKSLIQRILDPNPEHRITIQQIRNDEWFQKGYVPVSLLEHEDVNLDDVNAAFDNVEDQSTNQQCENDDMGPLTLNAFDMIILSQGLNLATLFDRGQDDMKYQTRFISQKLPNVVLSSMEVVAQSMGFKTHISNYKMRIEGISANKASYFSVILEVFEIAPTFFMVDIQKAAGDAGEYLKFYKNFSSNLEDIMWKPPHETSKLRISKTKCKGQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2536 445 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Ssu6g2536 445 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Ssu6g2536 445 Pfam NAF domain 304 362 IPR004041 GO:0007165
Ssu6g2536 445 Gene3D Kinase associated domain 1, KA1 301 427 - -
Ssu6g2536 445 SUPERFAMILY Protein kinase-like (PK-like) 6 275 IPR011009 -
Ssu6g2536 445 Gene3D Phosphorylase Kinase; domain 1 2 87 - -
Ssu6g2536 445 Gene3D Transferase(Phosphotransferase) domain 1 89 269 - -
Ssu6g2536 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Ssu6g2536 445 SMART serkin_6 9 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2536 445 Pfam Protein kinase domain 9 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2536 445 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 442 - -
Ssu6g2536 445 PANTHER - 2 442 - -
Ssu6g2536 445 ProSiteProfiles Protein kinase domain profile. 9 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2536 445 CDD CIPK_C 308 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2536 Ssu-Chr6 59652408 59664525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2536 1 387 CBL-interacting serine-threonine protein kinases AT4G24400 80.412 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu6g2536 Pkinase 1.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2536 - - gmx:100816735 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2536 6 59652408 59664525 Ssu6g2536 6 59652408 59664525 ECH