Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2525 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAGCGGAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTTGGAGTTATGATCTTCTCCAGCACCGGCAAACTATACGATTTCGCCAGTTCCAGTATGAAATCAGTCATTGACAGATACAACAAATCAAAAGAACACTGTCAACTTGGGAGTTCAGTCTCTGAAATTAagTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTACAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGTTTGACAGTCAAAGATTTACAAAATTTGGagaaccaattagaaattagccTCCGTGGTGTCCGTATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAACTAAATCAGAAGGGAAACCTCATACAGCAAGAAAATGTAGAACTGTATAAGAAGGTAAATCTAATTTGTCAAGAAAACAAGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGAGAACGAAACAAACAGAAATTCTGTTCTCACAAATGGTCTAAGCATAGGAGAGGATTTGCATGTACCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGCACCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGA 717 0.3961 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEHCQLGSSVSEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKDLQNLENQLEISLRGVRMKKDQLLMDEIQELNQKGNLIQQENVELYKKVNLICQENKELKKKVYGTKDENETNRNSVLTNGLSIGEDLHVPVNLQLSQPQQQHYKAPSGTTKLGLQLH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2525 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Ssu6g2525 238 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g2525 238 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g2525 238 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Ssu6g2525 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 238 - -
Ssu6g2525 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ssu6g2525 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu6g2525 238 MobiDBLite consensus disorder prediction 218 238 - -
Ssu6g2525 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Ssu6g2525 238 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2525 Ssu-Chr6 59473157 59509063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2525 1 230 MADS-box Gene Family AT2G22630 59.916 7.12e-94 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu6g2525 K-box 7.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2525 K09264 - gmx:100812413 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2525 6 59473157 59509063 Ssu6g2525 6 59473157 59509063 ECH