Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2523 ATGGCCTCACAAGCAGTGCAGCTGCGTATCGAAGACAGTCAAGTGGTTATGGACAATGGCATACTGCAAGTGTATTTATCCAATCCAGCTGGATTTGTTACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAGCGAGATTGATGATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCCGGAAGTACAGGAACAACTGGGACATTTGAGCTGATTGTTGGAACAAGTTTCAATGTTATAACGGAAAATGAGGAACAGGTTGAAATCTCATTCACAAGTAAGTGGGATCCATCTCTGAAGGGAGAGCGAGCACCTCTAAATATCGACAAAAGGTATGTGATGCTTCGTAATTCCTCAGGATTCTACTCCTACGCCATCTTTGAACACCTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTTCAAGCTTCGAAAAGACAAGTTTCATTACATGGCCGTGTCGGATAACAGACAAAGATTTATGCCTCTCCCAGACGACAGATTGTCCGAAAGAGGAAAAGTACTAGTTCCGCCCGAGGCTGTTTTGCTCGTCAATCCGGTGGAGCCAGAGTTTAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGTGAGAACAAAGATCTTAAGGTTCATGGGTGGATAAGTTCCCAACCCGAAACTGATCCAGCCATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCTGTTAAACAGAACCTTACTTCCCATGTTGGCCCATATTGTCTCTCAATGTTTCTTAGTGCCCATTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAATGAACCGTGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTGTTAGATGGTGATGACTCGCTGGAGCTCTGGGAGGACGCCAAACATCAGATGAACGAAGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAATGTCTAGCCAACGGGGCAGTGTGTGTGGCACATTACTAGTCCGAGACAGGTGTGTAAGTGACGAGTACATAGTAGCAGAAGGCGCATACGTAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGGGAATGCAAGGGATACCAATTTTGGACTAAAGCAAACGAGGAAGGGTACTTCTCAATCAATAATATACGCAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAACAACGCTGTCCTCACCATAACACCAgGTTGTGAAATAAACGTTGGTGACATTATTTATGAGCCACCAAGAGATGGCCCAACATTATGGGAGATAGGCACTCCTGATCGCTCTGCTGCTGGATTCTATGTTCCTGATCCTAATCCGAACTACATAAACAAACTTTTTGTCGACCATCCAGACAAGTTTAGGCAGTATGGCCTGTGGGAAAGATATGCAGATTTATACCCAAATGAGGATTTAATTTATACAGTGGGAGCCAGTGACTACACAAAAGATTGGTTCTATGCACAGGTCACCAGGAAGCAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAGGTTCAATCTCGATGATGTGGAGGCAAGTAAAATCTACAAATTACGGTTGGCACTTGCAAGTGCAAATGTCTCCGAGTTACAGGTTAGAGTGAATGATCCAAAACAAGATCCTCCTCTGTTCTCTACGGGAGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCACGGACTCTACTGGCTATTCAACATTGATGTGCCTGGTATTCTGGTAGAGAATGGCGTCAATACTATATTTCTAACACAGACTATGGCTAGTGGCCCCTTGGCCCTCTTCCAGGGGATAATGTACGACTATATTCGACTAGAAGAGATGTCAGCAAATAGCAACAAAATGGTTGCTTGTGGGTGA 1959 0.441 MASQAVQLRIEDSQVVMDNGILQVYLSNPAGFVTRIQYNGIDNLLEALSEIDDRGYWDVVWSEAGSTGTTGTFELIVGTSFNVITENEEQVEISFTSKWDPSLKGERAPLNIDKRYVMLRNSSGFYSYAIFEHLQEWPAFNIPQIRIVFKLRKDKFHYMAVSDNRQRFMPLPDDRLSERGKVLVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLKVHGWISSQPETDPAMGFWVIIPSNEFRSGGPVKQNLTSHVGPYCLSMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDSLELWEDAKHQMNEEVQSWPYDFPASEDFQMSSQRGSVCGTLLVRDRCVSDEYIVAEGAYVGLAPPGEAGSWQRECKGYQFWTKANEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNAVLTITPGCEINVGDIIYEPPRDGPTLWEIGTPDRSAAGFYVPDPNPNYINKLFVDHPDKFRQYGLWERYADLYPNEDLIYTVGASDYTKDWFYAQVTRKQEDGSYQGTTWQIRFNLDDVEASKIYKLRLALASANVSELQVRVNDPKQDPPLFSTGVIGKDNAIARHGIHGLYWLFNIDVPGILVENGVNTIFLTQTMASGPLALFQGIMYDYIRLEEMSANSNKMVACG 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2523 652 PANTHER LG27/30-LIKE GENE 1 646 - -
Ssu6g2523 652 Pfam Rhamnogalacturonate lyase family 3 203 IPR010325 -
Ssu6g2523 652 CDD RGL4_C 449 639 - -
Ssu6g2523 652 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
Ssu6g2523 652 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Ssu6g2523 652 Gene3D - 445 639 - -
Ssu6g2523 652 CDD RGL4_N 8 298 - -
Ssu6g2523 652 SUPERFAMILY Galactose mutarotase-like 14 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu6g2523 652 SUPERFAMILY Starch-binding domain-like 337 435 IPR013784 GO:0030246
Ssu6g2523 652 Gene3D - 335 434 - -
Ssu6g2523 652 Gene3D - 5 279 IPR014718 GO:0030246
Ssu6g2523 652 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Ssu6g2523 652 CDD RGL4_M 338 437 IPR029413 -
Ssu6g2523 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2523 Ssu-Chr6 59394160 59402480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2523 1 642 Polysaccharide Lyase AT1G09890 63.142 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2523 K18195 - gmx:100815677 1208.74