Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2522 ATGGCCTCACAAGCAGTGCAGTTGCGTATCGAAGACCGTCAAGTGGTTATGGACAATGGCATACTGCAAGTGTATTTATCCAATCCAGGTGGATTTGTTACTAGAATGCAATATAACGGCATTGATAATCTGCTTGAAATTCTTAACGAAAGAGATAACAGAGGGTATTGGGACGTTGTTTGGAGTGAATTCGGAAGTACAGGAACAACTGGAACATTTGAACGGATTGTGGGAACAAGTTTTAATGTTATAACGGAAAATGAGGAACAAGTTGAAATCTCGTTCACAAGAAAGTGGAATCCATCTTTGAAGGGAAAGAGAGCACCTCTTAATATCGACAAAAGGTATGTGATGCTTCGTAATTCCTCAGGATTTTACTCCTACGCCATCTTTGAACACCTGCAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTACAAGCTTCGTAAAGACAAGTTTCATTACATGGCCGTGTCGGATAAAAGACAAAGATTTATGCCTCTCCCAGACGACAGATTACCGGGAAGAGGAAAAGAACTAGTTCCTCCGGAGGCAGTTTTGCTCGTCAATCCAGTGGAGCCAGAGTTTAAGGGagagGTGGATGACAAGTATCAATACTCAAGTGAGAACAAAGATCTCACGGTTCATGGGTGGATAAGTTCCCAATCCGAAGCTGATCCAGCCATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCTGTTAAACAGAACCTTACTTCCCACGTTGGCCCAATAAGCCTTGCTATGTTCCTTAGTGCTCATTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAACGAGCCGTGGAAGAAAGTTTTTGGACCAACTTTTGTTTATCTTAACACTTTGTTAGATGGTGATGACCCGCTAGAGCTCTGGGAGGACGCTAAATATCAGATGAACGAAGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAATGTCTAGCCAACGAGGCAGTGTGTGTGGCACATTACTAGTCCGAGACAGGTGTGTAAGTGACGAGTACATAATAGCAGAAGGCGCATACGTAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGGGAATGCAAGGGATACCAATTTTGGACTAAAGCAAACGAGGAAGGGTACTTCTCAATCAATAATATACGCAGTGGGGATTATAATCTCTACGCATGGGTTCCAGGTGTCATTGGAGAGTATTGGAACAACGCTGTCCTCACCATAACACCAgGTTGTGAAATAAACGTTGGTGACATTATTTATGAGCCACCAAGAGATGGCCCAACATTATGGGAGATAGGCACTCCTGATCGCTCTGCTGCTGGATTCTATGTTCCTGATCCTAATCCAAACTACATAAACAAACTTTTTGTCGACCATCCAGACAAGTTTAGGCAGTATGGTCTGTGGGAAAGATATGCAGATTTATACCCAAATGaagatttaatttatacagTGGGTGCCAGTGACTACACAGAAGATTGGTTCTTTGCACAGGCTACCAGGAAGAAAGAAGACGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGACGATGTGGAGGCAAGTAAAATCTACAAATTACGGTTGGCACTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGAGTGAACGATCCAAAACAAGATCCTCCACTGTTTACCACGGGAGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCAGCATTGATGTGCCTGGTCTTCTGCTAGAGAATGGCGTTAATACTATATTTCTAAGACAGACTATGGCTAGTGGCCCCTTGGCCCTCTTCCAGGGGATAATGTACGACTATATTCGTCTAGAAGGTCCTACCCCTTTTCCacccataaaaaaatattaa 1953 0.4301 MASQAVQLRIEDRQVVMDNGILQVYLSNPGGFVTRMQYNGIDNLLEILNERDNRGYWDVVWSEFGSTGTTGTFERIVGTSFNVITENEEQVEISFTRKWNPSLKGKRAPLNIDKRYVMLRNSSGFYSYAIFEHLQEWPAFNIPQIRIVYKLRKDKFHYMAVSDKRQRFMPLPDDRLPGRGKELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLTVHGWISSQSEADPAMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPLELWEDAKYQMNEEVQSWPYDFPASEDFQMSSQRGSVCGTLLVRDRCVSDEYIIAEGAYVGLAPPGEAGSWQRECKGYQFWTKANEEGYFSINNIRSGDYNLYAWVPGVIGEYWNNAVLTITPGCEINVGDIIYEPPRDGPTLWEIGTPDRSAAGFYVPDPNPNYINKLFVDHPDKFRQYGLWERYADLYPNEDLIYTVGASDYTEDWFFAQATRKKEDGSYQGTTWQIKFNLDDVEASKIYKLRLALASANVSELQVRVNDPKQDPPLFTTGVIGKDNAIARHGIHGLYWLFSIDVPGLLLENGVNTIFLRQTMASGPLALFQGIMYDYIRLEGPTPFPPIKKY 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2522 650 CDD RGL4_N 8 305 - -
Ssu6g2522 650 Gene3D - 5 278 IPR014718 GO:0030246
Ssu6g2522 650 SUPERFAMILY Galactose mutarotase-like 16 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu6g2522 650 CDD RGL4_C 449 639 - -
Ssu6g2522 650 Gene3D - 445 639 - -
Ssu6g2522 650 Pfam Rhamnogalacturonate lyase family 3 203 IPR010325 -
Ssu6g2522 650 SUPERFAMILY Starch-binding domain-like 337 435 IPR013784 GO:0030246
Ssu6g2522 650 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Ssu6g2522 650 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 643 - -
Ssu6g2522 650 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Ssu6g2522 650 Gene3D - 335 433 - -
Ssu6g2522 650 PANTHER LG27/30-LIKE GENE 1 643 - -
Ssu6g2522 650 CDD RGL4_M 338 437 IPR029413 -
Ssu6g2522 650 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2522 Ssu-Chr6 59381532 59388623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2522 1 642 Polysaccharide Lyase AT1G09890 63.608 0.0 857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2522 6 59381532 59388623 Ssu6g2522 6 59381532 59388623 ECH