Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2516 ATGGAGCCAGCAATGTACGGACACCCCCAGCCCATGAACATGCCCTCGAAGATCGGCGCCGGCGAAAGTGACGACGGCGCCGACGCCGCCATAGACGGCCACCACCACATTCAGTACGAAACTCACGACGGCGGCGGCGGCGTGGTCGTCGAGGATGTTACCTCGGATGCGGTCTATGTCTCTGGCGGTGGAGGGCCCGAAGAGTCCAGCCAGCTTACGCTGTCGTTTCGTGGCCAGGTTTACGTATTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTATTGTTACTGTTGGGTGGGTGTGAACTATCTTCAAGTGGTTCGCCGTGTGTCGATGCGGTGGCTCAACAAAATCAGAGGGGTTCAACTGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCCTCGTTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTtgataaaaaagtgagatataGTGTACGTCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGTCAGTTCACTTCATCTAAGAGACAAGATGGAGCTAATAGTTGGGGTACAGACCAAGATTCGGGACAGGATGATAGTCAATCAGAAACCTCATGCACGCATTGTGGCATTAGTTCAAAATCAACCCCAATGATGAGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTCTCTAAGAGAAATCAGGAACACTCTCTTGCACCAGTTGAGCAGGTTGATGAAGGTAACGACTCAGACTGTCGGACTGCCGCCGAACCCTGCACATAA 822 0.5146 MEPAMYGHPQPMNMPSKIGAGESDDGADAAIDGHHHIQYETHDGGGGVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDAVAQQNQRGSTEYPARCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKRQDGANSWGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLAPVEQVDEGNDSDCRTAAEPCT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2516 273 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Ssu6g2516 273 PANTHER GATA TRANSCRIPTION FACTOR 28 6 268 IPR045280 GO:0006355
Ssu6g2516 273 PANTHER GATA TRANSCRIPTION FACTOR 25 6 268 - -
Ssu6g2516 273 MobiDBLite consensus disorder prediction 175 215 - -
Ssu6g2516 273 ProSiteProfiles GATA-type zinc finger domain profile. 196 254 IPR000679 GO:0006355|GO:0043565
Ssu6g2516 273 SMART tify_2 65 100 IPR010399 -
Ssu6g2516 273 Gene3D - 192 251 IPR013088 GO:0006355|GO:0008270
Ssu6g2516 273 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Ssu6g2516 273 MobiDBLite consensus disorder prediction 167 220 - -
Ssu6g2516 273 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Ssu6g2516 273 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Ssu6g2516 273 MobiDBLite consensus disorder prediction 250 273 - -
Ssu6g2516 273 Pfam GATA zinc finger 202 237 IPR000679 GO:0006355|GO:0043565
Ssu6g2516 273 Pfam tify domain 66 99 IPR010399 -
Ssu6g2516 273 Pfam CCT motif 134 176 IPR010402 GO:0005515
Ssu6g2516 273 CDD ZnF_GATA 201 247 IPR000679 GO:0006355|GO:0043565
Ssu6g2516 273 MobiDBLite consensus disorder prediction 1 29 - -
Ssu6g2516 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2516 Ssu-Chr6 59223415 59228216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2516 66 257 Tify Gene Family AT4G24470 69.792 3.72e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu6g2516 CCT 2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2516 - - pvu:PHAVU_008G182900g 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2516 6 59223415 59228216 Ssu6g2516 6 59223415 59228216 ECH
Ssu6g2516 6 59223415 59228216 Ssu1g3152 1 82474533 82479479 PCT