Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2514 ATGCCTCACAGAGCGACTTACTTTTTCCCGAGGCAATTCCCGGAAAGAGGGTTGGATGAATCTTCTAAGCAGAGATTAGATCACGAGAAGAGGAAAATCGTCAACTCCATCAAATCATCAGATACCTTTGGCTTTGAAAGCGACGCGCCGAAAAAGCCAACACCGAGTCCCACACCTGCCGCCAATGACGACGTCGTTTTCTCCTCCAGCAAGCAATCCGCGGTCTCCGACCTCTTCACCGGCGCCGACAAGTTCCGAACCAAGCAAAAGCAAATCGCCGCCTTCTGCGATTGGCTGATCGATAAAAAGAAGGACCGGAACCGACCGAGCCACCATTTCAAACCCTATCCCATCGACGACGACGAGGACGACGACCGCGAGCTTCTGCTTCCGCCGCCGCCGGCGGAAGCGAAGGATGCCGTAGACCAGAGCTTCGACCGGCAGGTTTCGCTGCCGCGGCTGTCCAGCGGGAGCAGCTACGCTGGAAGCTTGTTCACGCTGGATGGTACCGCCACATTCTCCAGCGACGTCACCAAAGACGAAACGTCGTCGTTTCATCAAGTCTTCACCGAAGACGCAACAaaaaagcaagaagaagaagaagtgaaAGAAAAACGCAACACCGCGCAGAAGCACAGAGAAAGCTACTACCTGCAACTCGCGTTGGCGGAGAGGCTCTCTTACTTGGCAAGCCTCGCCTCCAAACCTGTCCTCACACTCGACGCTGGCACCGAAACCTGGGACGCCGAGTCCGTTTCGTACCGTCTATGGGTGAGTGGGTGCTTGTCGTACACGGACAAGATATCGGACGGTTTCTACAACATATTGGGGATGAATCCGTACCTGTGGGTGATGTGCAACGATGTGGAGGAAGAAGGGAAGCGGTTACCGACTCTGATGGCGCTGAAGGCGGTTGAACCTAGCGAGACTTCGATAGAGGTGGTTCTTTTCGATAGACACGGGGACTCTCGGCTTAAGGAGCTTCAAGATAAAGCTCAGGAGTTGTATTCTGCTTCGGAGAACGCACTGGTGCTGGTGGAGAAGCTCGGAAAACTCGTTGCCATATGCATGGGGGGTACGTTCCCGGTGGAACAAGGAGATCTACACAAGCGGTGGAAGTTGGTTAGCAAGAGGTTAAGGAACTTTCACCAATGTGTTGTGCTTCCCGTGGGTAGCTTGTCTAGTGGACTCTGTAGGCATCGCGCGATTCTCTTCAAGAGATTGGCGGATTACATAGGTTTGCCGTGTCGCATTGCTCGAGGTTGCAGGTACTGTGTCTCGGATCATAGATCGTCTTGCCTTGTCAAGATTAAAGACGACAGACAGCTCTCGAGgGAATATGTAGTTGACCTGGTTGGGGAACCAGGAAATGTCCATGGGCCGGATTCCTCAATTAATGGAGCATATGTGTCTTCAATACCTTCCCCATTTCAAATTACTCATTTGAAAGAATCCCAATTGCCATATGTGGATGTTGCAGCATGTTCTCAATCTCTTGATAACACTTATCCAGGCTGTGTACAGGAAGATCAACAAGTTGAAGAAACTGATCTgctgaaaaataataatggctCTATATATGCTGCAATAGATCAAACTTGTGGAGGTACAGAACCACCTCTAATTCCTTTTGGCTTGAAAGGGAATGACAAGGAATGTGCGATTCTAGGTTTATTAAATTTTCCTCCCATCTATGAAGGTTTTTCTGAAGATCTTCACCCAGCCTCTAAAGCATCATTACATGAGCACCCCACGCTCAGTAAAGATTCAGTTGTAGTACTAGAAGCTTCCAACAAAGAGATCATTGTAAAGGGAAGTTCTGTGGTAAAAAGTAACTATAAGCAATCTATACTGAGCTCGTCCAGCGAATCAGAACAGgaacaagtaaaaaataaagttgaaaatcAGGGTGCTGGTAATATTCCAAGATACTTAAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATACCATGGGATGATTTACGAATCAGAGAGCGTATTGGTGCTGGATCATTTGGGACAGTGTATCGTGCTGAATGGCATGGATCAGATGTTGCTGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACTAAACGTCCCCATCTATCTATAGTAACAGAATATTTGCCTAGAGGCAGTTTATTCCGCCTAATACATAAGCCAGCATCTAGTGAGATTCTAGATCCAAGGAGAAGATTACGGATGGCTTTAGACGTGGCTAAAGGGATCAATTATCTCCACTGTTTGAAGCCTCCTATTGTGCACTGGGATCTCAAAACCCCAAACCTGTTGGTGGACAAAAATTGGACTGTAAAGGTGTGTGATTTTGGATTGTCCCGATTTAAGGCGAACACTTTCTTATCATCAAAATCTGTTGCTGGAACAccTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCCTGCAACAACCGTGGAATGGACTTAGTCATGCCCAGGTGGTTGGAGCTGTCGCTTTCCAGAATAGGAGGCTTGCTATCCCTGCAAACATCTCCCCAGCGTTGGCCTCCCTCATGGAATCGTGTTGGGCCGATAACCCTGCTGATCGCCCATCTTTTGCTAGCATAGTTGAGTCGCTAAAGAAGCTACTGAAGTCACCAGCGGATGCAATAAAAATGGGTGGGACATAA 2802 0.4686 MPHRATYFFPRQFPERGLDESSKQRLDHEKRKIVNSIKSSDTFGFESDAPKKPTPSPTPAANDDVVFSSSKQSAVSDLFTGADKFRTKQKQIAAFCDWLIDKKKDRNRPSHHFKPYPIDDDEDDDRELLLPPPPAEAKDAVDQSFDRQVSLPRLSSGSSYAGSLFTLDGTATFSSDVTKDETSSFHQVFTEDATKKQEEEEVKEKRNTAQKHRESYYLQLALAERLSYLASLASKPVLTLDAGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEEGKRLPTLMALKAVEPSETSIEVVLFDRHGDSRLKELQDKAQELYSASENALVLVEKLGKLVAICMGGTFPVEQGDLHKRWKLVSKRLRNFHQCVVLPVGSLSSGLCRHRAILFKRLADYIGLPCRIARGCRYCVSDHRSSCLVKIKDDRQLSREYVVDLVGEPGNVHGPDSSINGAYVSSIPSPFQITHLKESQLPYVDVAACSQSLDNTYPGCVQEDQQVEETDLLKNNNGSIYAAIDQTCGGTEPPLIPFGLKGNDKECAILGLLNFPPIYEGFSEDLHPASKASLHEHPTLSKDSVVVLEASNKEIIVKGSSVVKSNYKQSILSSSSESEQEQVKNKVENQGAGNIPRYLNLEPSLAMDWLEIPWDDLRIRERIGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHKPASSEILDPRRRLRMALDVAKGINYLHCLKPPIVHWDLKTPNLLVDKNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQNRRLAIPANISPALASLMESCWADNPADRPSFASIVESLKKLLKSPADAIKMGGT 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2514 933 SUPERFAMILY Protein kinase-like (PK-like) 642 916 IPR011009 -
Ssu6g2514 933 SMART serkin_6 663 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2514 933 Gene3D Phosphorylase Kinase; domain 1 656 740 - -
Ssu6g2514 933 Pfam Protein tyrosine and serine/threonine kinase 664 917 IPR001245 GO:0004672|GO:0006468
Ssu6g2514 933 CDD STKc_MAP3K-like 669 917 - -
Ssu6g2514 933 Coils Coil 195 215 - -
Ssu6g2514 933 MobiDBLite consensus disorder prediction 1 65 - -
Ssu6g2514 933 Gene3D Transferase(Phosphotransferase) domain 1 742 929 - -
Ssu6g2514 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Ssu6g2514 933 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 126 931 - -
Ssu6g2514 933 ProSitePatterns Protein kinases ATP-binding region signature. 669 690 IPR017441 GO:0005524
Ssu6g2514 933 MobiDBLite consensus disorder prediction 16 36 - -
Ssu6g2514 933 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 126 931 - -
Ssu6g2514 933 ProSiteProfiles Protein kinase domain profile. 663 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2514 933 Pfam Ethylene-responsive protein kinase Le-CTR1 249 458 - -
Ssu6g2514 933 MobiDBLite consensus disorder prediction 109 142 - -
Ssu6g2514 933 PRINTS Tyrosine kinase catalytic domain signature 888 910 IPR001245 GO:0004672|GO:0006468
Ssu6g2514 933 PRINTS Tyrosine kinase catalytic domain signature 844 866 IPR001245 GO:0004672|GO:0006468
Ssu6g2514 933 PRINTS Tyrosine kinase catalytic domain signature 737 750 IPR001245 GO:0004672|GO:0006468
Ssu6g2514 933 PRINTS Tyrosine kinase catalytic domain signature 778 796 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2514 Ssu-Chr6 59182068 59193687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2514 1 932 MAP Kinase Kinase Kinase AT4G24480 56.167 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu6g2514 PK_Tyr_Ser-Thr 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2514 - - gmx:100786546 1672.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2514 6 59182068 59193687 Ssu6g2514 6 59182068 59193687 ECH
Ssu6g2514 6 59182068 59193687 Ssu1g3155 1 82556243 82564273 PCT