Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2510 ATGAGCGAACAAGAGAACAAGGGTTCTACTTTTCCGGGAACCAACTCCGCCTATTCAGGTTTTCTTCTTGACCCTGCAAAATGTAGCATGCTGAATTTGCCGGACAAACAAAGACTAGTCCGTGAAATTGCTCGACAGTCAAAAGATGCCTCAAGTATGCTTCAGTCATTTACACGCAGGGAACTTCTAGAAATAATCTGTGCTGAATTAGGCAAAGAGAGGAAGTACACAGGATATACCAAGAGTCAAATGATAGAACATCTTCTGAAGATAATTTCTAAGAACTCCAACTTGCACATCAATGGAAATACTCCTGCTCATTCTCCTGCCAAAAGTTGCATTGGatctaaaaggaaaaagaaacctGCATCTCAGGATTTACATCATGCTCCTCTAGGGAACAGTAAAGAGGAAACAGGGAAAACCCTTTTGTGTCAAAATGTTGCTTGCAAAGCTACATTGAATCCAGAAGATTCTTTTTGCAAGAGATGTTCTTGTTGTATATGTCATTGTTATGATGATAACAAGGATCCTAGTTTGTGGTTGACCTGCAGTACTGATCTTCCTAATGAAGAGTCATGTGGAATGTCCTGTCATTTGCAATGTGCTCTGAGTAATCAAATGTCTGGCATTTTGAAGGGTAGTTGTGCTATTAAGTTGGATGGAACCTTCTGTTGTGTTTCTTGtggaaaaattaatgaattaatgaaGACATGGCGAAAGCAATTATTGGTTGCcaaagaagcaagaagaacTGATATACTCTCTTTGCGAATATCCCTGGCCCACAGAATTCTTGTAGGAACAGAAGTCTACAAGGAAGTGCATAAGATTGTAGAAACTGCTCTCACATTACTGGAGAATGAAGTGGGATCACTTGATGATGTATATGCTAGGATGACACGTGGGATTGTAAGCAGGCTTTCATGTGGTGCTGAGGTTCAGAGATTGTGCTCTACTGCACTTGAATgttttgattcaaagttttCTGACCTTTTCTCTGTTTGTGTGGAACAGAAAGATGCACCAGCGTGCTCAGTTCGTTTTGAAGAGTGTCTTCCTACTTCAGTGGTTATCGTGCTAGAGTACAAAGACAAACTTTTAAAGAACTTTCTAGGCTGCAGGCTTTGGCACAGAATATCAACAATGGACTACCCTGAACAACCCACCTTCATTGTCTTGAGGCCTGAGAAAAGATTCAAGTTAGAAAACCTCCATCCTTCAACTGAGTACTTTTGCAAGGCTTCTCTGTTCAGCAGCACAGGGATTTTGGGTGCTGCAGAAGCTAAATGGGTGACACCTTGTGAACCCACCAAttgttcaaaatttattagTCGCAGTGGGAATCATTTAAGATGGTCCCCTCAGAGATCCTCAGGTACAGGAGTGGACATATCTGCCAACTCTGACATGAAGTTGTCATCTGGAAAACATCCTGGGAAACACATCATTTTGAGCATCAGGAGCAGGTTTGAAGAGTTCCTCTCCAAGCCTCACTCACTAGAgcctttttcatataaaaattttgctGCTGTTTCGCCTTCCACGCCTTCTAAAACCTATGAGATGAGACAAATTCCTGGTTTGAATTCTAGAAAGTGCTCGAAGGAAAACGATTACGAGTATTCTGTCAGGGTAGTCAAATGGTTAGAGCATCGGGGGCACATAGATGAAAACTTCAGAGTAAGATTTCTCACTTGGTTCAGCCTTAAGGCTACTCAGCAGGAGAGGAGGGTGGTTAGTGCTTTTGTTGATGCACTGATTGATGACCCAGCAAGCTTAGCGGACCAGCTCATACACACTTTCAGTGACGAGATATGCTGCGAGCAAAAAACTTAG 1839 0.4008 MSEQENKGSTFPGTNSAYSGFLLDPAKCSMLNLPDKQRLVREIARQSKDASSMLQSFTRRELLEIICAELGKERKYTGYTKSQMIEHLLKIISKNSNLHINGNTPAHSPAKSCIGSKRKKKPASQDLHHAPLGNSKEETGKTLLCQNVACKATLNPEDSFCKRCSCCICHCYDDNKDPSLWLTCSTDLPNEESCGMSCHLQCALSNQMSGILKGSCAIKLDGTFCCVSCGKINELMKTWRKQLLVAKEARRTDILSLRISLAHRILVGTEVYKEVHKIVETALTLLENEVGSLDDVYARMTRGIVSRLSCGAEVQRLCSTALECFDSKFSDLFSVCVEQKDAPACSVRFEECLPTSVVIVLEYKDKLLKNFLGCRLWHRISTMDYPEQPTFIVLRPEKRFKLENLHPSTEYFCKASLFSSTGILGAAEAKWVTPCEPTNCSKFISRSGNHLRWSPQRSSGTGVDISANSDMKLSSGKHPGKHIILSIRSRFEEFLSKPHSLEPFSYKNFAAVSPSTPSKTYEMRQIPGLNSRKCSKENDYEYSVRVVKWLEHRGHIDENFRVRFLTWFSLKATQQERRVVSAFVDALIDDPASLADQLIHTFSDEICCEQKT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2510 612 MobiDBLite consensus disorder prediction 105 135 - -
Ssu6g2510 612 Pfam PHD - plant homeodomain finger protein 145 264 IPR032881 -
Ssu6g2510 612 PANTHER OS08G0220600 PROTEIN 14 611 - -
Ssu6g2510 612 PANTHER VIN3-LIKE PROTEIN 2-RELATED 14 611 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2510 Ssu-Chr6 59138489 59142803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2510 23 606 PHD Gene Family AT5G57380 34.039 1.28e-100 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2510 - - gmx:100785502 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2510 6 59138489 59142803 Ssu6g2510 6 59138489 59142803 ECH