Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2507 ATGTCGAGAGAACCAAAGAAGCAAAGTAAGGTTCCTTTCAGCGAGAAAGACGCTGCTGCTCTATTGCAAAGGTACGATGCACGCACGGTTTTGACATTGCTTCAGGAATTGGCAAATTATCCGCATTCGAAGTTCGACTGGAACGAATTGGCGGCGAAAACCTCAACCGGAATCTCTGATGCGAGAGAGTATCAAATGCTGTGGCGTAATCTAGCGTACGGTCACTCCTTCACTGAGAATTTCGACAACGATGCTCAACTTATGGATGATGATAGTGACTTAGAATGTGAGCGAGAAGCATTACCCCGCATAAACAAGGAAACTGCAGCAGAAGTTTCAGCATGTGTGCAGGTAATGATTACATCTTTTAAGCTGAGTGAATCCACCCCTACTAGCTTGGTGATTCAGGCTCCATTGACTATAAATGTTCCAGCTTGTGATTCATCTACGATTGCTAATAAGGAAAGTTCACAACCCTCTAATTTAAGTACGCAAGAGACAAGCATTATTTTTCCAGTTACGGTTAAAAGACAGACACTGCCAAATGTATCATCAAGAGCTATGGAAGCCAATAGCTCAGTTAGTGGCAATACAtccattaaaaagaaaagagcagCATGGTCAGAGGAAGAGGACATGCAGCTACGAGCTGCTGTTCAGAGGTGGGGTGAAGGGAATTGGGCAAATATGGTTAAAAGGGAAGACTTTCCAATTAAGAGAAGTACCTCACAGTTGTCTAAGAGGTGGAGCACATTACGAAAGAAAGATGACGGCGCGAATTGA 783 0.4266 MSREPKKQSKVPFSEKDAAALLQRYDARTVLTLLQELANYPHSKFDWNELAAKTSTGISDAREYQMLWRNLAYGHSFTENFDNDAQLMDDDSDLECEREALPRINKETAAEVSACVQVMITSFKLSESTPTSLVIQAPLTINVPACDSSTIANKESSQPSNLSTQETSIIFPVTVKRQTLPNVSSRAMEANSSVSGNTSIKKKRAAWSEEEDMQLRAAVQRWGEGNWANMVKREDFPIKRSTSQLSKRWSTLRKKDDGAN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2507 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 257 IPR017930 -
Ssu6g2507 260 ProSiteProfiles Myb-like domain profile. 199 253 IPR001005 -
Ssu6g2507 260 Pfam Myb-like DNA-binding domain 205 252 IPR001005 -
Ssu6g2507 260 MobiDBLite consensus disorder prediction 240 260 - -
Ssu6g2507 260 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 259 - -
Ssu6g2507 260 CDD SANT_TRF 207 254 - -
Ssu6g2507 260 Gene3D - 197 257 - -
Ssu6g2507 260 SMART sant 203 255 IPR001005 -
Ssu6g2507 260 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 259 - -
Ssu6g2507 260 SUPERFAMILY Homeodomain-like 201 253 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2507 Ssu-Chr6 59062603 59067756 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2507 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2507 - - gmx:100819057 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2507 6 59062603 59067756 Ssu6g2507 6 59062603 59067756 ECH
Ssu6g2507 6 59062603 59067756 Ssu1g3161 1 82706259 82720618 PCT