Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2502 ATGCAGAGCGCGACGCGCGCCGAAGCGGAGCGTCTGCTGGGGATCGCGGAGAAGCTCCTCCAGAACCGCGATCTGATGGGCTCGCGCGAGTTCGCGATCCTGGCCCAGGAGACGGAGCCCCTCCTGGAGGGCTCAGACCAGATCCTCGCCATCGTGGACGTCCTCCTCGCCGCGGACAAGCGCGTCAACAACCACCCCGACTGGTACGCCGTCCTCCAGGTCGATCGCCGCTCCGACGACCTCGACCTCATCAAGAAGCAGTACCGCCGCCTCGCCCTCCTCCTCCACCCGGACAAGTCCCGCTTCCACTTCGCCGACCACGCCTTCAAGCTCGTCGCCGACGCCTGGGCCCTCCTGTCCGACCCCGTAAAGAAAGCCGTCTACGACAAGGAGCTCTCTTTCTTCTCCCGCGTCGATTTGTCCGTCCCCGGGTGGGTCCAGCAGGAGAAGCTCCCGGTCCGCAGGACCGGCCCTGGGCCCGGGCCCAGCGCCCGGAACAGCGCCGCGGCGCGGGACGAGATTCACGCCGAGGAGAACTCGCGGAGGAGGAACTCCACCTTCTGGACCGCGTGTCCCTACTGTTACCGTCTGTACGAGTACCCTAGGGCTTTACGAGGGTTGCTGCTTGCGGTGCCAGAATTGCGAGAGGTCCTTTCACGGCGTGGCCGTTCCGTCCCTCCCGCCGCTGGTGCCGGGTCAGGACGCGTATTATTGCTGCTGGGGGTTCTTCCCCATGGGCTTCGTTCTCGGCAGCTTCGGTTCCCTGGAGAAGGAGGCTGCTCCACCGCCGCCGCCGGGTTCTTCGCTGCCGAATTGGATGCCGGTGCGGGCGGAGAATGGCGCGGGGAGTGTCCAGGCGGCGGCggcgacgacgacgacgacgccGGTGGCTGCGGCGAGGGTGACTCGGTCGGGGGCGGCGGCGGTGGCGGTTACTTCGAACGGGGTTGGTTCGGCGTCGGGGACTGGGCCGAAGAAGCGAGGGAGGCCGAGGAAGTATCCTTTGCCATCGTGAGATGGGGTTTGGATTGGATGTGA 1038 0.6541 MQSATRAEAERLLGIAEKLLQNRDLMGSREFAILAQETEPLLEGSDQILAIVDVLLAADKRVNNHPDWYAVLQVDRRSDDLDLIKKQYRRLALLLHPDKSRFHFADHAFKLVADAWALLSDPVKKAVYDKELSFFSRVDLSVPGWVQQEKLPVRRTGPGPGPSARNSAAARDEIHAEENSRRRNSTFWTACPYCYRLYEYPRALRGLLLAVPELREVLSRRGRSVPPAAGAGSGRVLLLLGVLPHGLRSRQLRFPGEGGCSTAAAGFFAAELDAGAGGEWRGECPGGGGDDDDDAGGCGEGDSVGGGGGGGYFERGWFGVGDWAEEAREAEEVSFAIVRWGLDWM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2502 345 PRINTS DnaJ domain signature 69 87 IPR001623 -
Ssu6g2502 345 PRINTS DnaJ domain signature 104 124 IPR001623 -
Ssu6g2502 345 PRINTS DnaJ domain signature 88 103 IPR001623 -
Ssu6g2502 345 MobiDBLite consensus disorder prediction 280 304 - -
Ssu6g2502 345 SMART dnaj_3 66 124 IPR001623 -
Ssu6g2502 345 MobiDBLite consensus disorder prediction 152 177 - -
Ssu6g2502 345 CDD DnaJ 67 121 IPR001623 -
Ssu6g2502 345 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Ssu6g2502 345 Pfam DnaJ domain 67 129 IPR001623 -
Ssu6g2502 345 Gene3D DnaJ domain 56 139 IPR036869 -
Ssu6g2502 345 SUPERFAMILY Chaperone J-domain 59 132 IPR036869 -
Ssu6g2502 345 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Ssu6g2502 345 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 209 - -
Ssu6g2502 345 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2502 Ssu-Chr6 58975627 58976664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2502 2 311 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.453 5.19e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2502 - - gmx:100816918 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2502 6 58975627 58976664 Ssu6g2502 6 58975627 58976664 ECH
Ssu6g2502 6 58975627 58976664 Ssu1g3174 1 82884420 82887489 PCT