Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2501 ATGCTTCCCTTTCGGAGATTCTACGGGTTCGAGAGCTGGCTAGACCACGACTCAGCCCACGTCCCAACCTCCTTGATCAAGAAGGCAGTCGAGTTGGACGGTGCAAGATCAAAAACGGAGCGCAAATCAACGGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGACAGAGAATCAACGCCCACCTCTCCACCTTACGTTCTCTCCTCCCTACCGCCGCCAAGTCTGATAAGGCGTCGTTGCTGGGGGAAGTGGTTGAGCACGTGAAACGGCTGAGGAAGCAGGCCGATGACGTGGCGTGCGGAGACTCGTCGTCCTCGTGCGACGGCGAACGGGGTTCGGTTCTGTCTGAGGCGTGGCCGTTTCCCGGGGAGTGCGACGAGGCGACGGTGAGTTGCTGCGACGGCGACGACGGGGAAGCGCGGCGGGTGAAGGCGACGCTGTGCTGCGAGGACCGGCCCGGTCTGAACCGGGACCTGACGCAGGCAATCCGGTCGGTTCGGGGGAAGCCGGTTCGCGCGGAGATGATGACGGTTGGGGGACGGACCAAGAgtgtggtggaggttgagtgGCCTCCTCGTGAAGCGGAAGAAGAGGTGGAGGGAAAGGAGGTTGGGGCGCTGGAACGGGCCTTGAAGGCTGTGATAGAGAATCGGGCTTTGGTGGGCTACGGAATGGGCCCAATCGTTTTGGGCCAGAAACGGGCTAGGGATTGTTATGGTTCGCCTAGTAGTGAGGTTGACTCCGCCTTCTTGTTGAGGAATCGGAACTTCTGCTAA 786 0.5891 MLPFRRFYGFESWLDHDSAHVPTSLIKKAVELDGARSKTERKSTEACKSHREAERRRRQRINAHLSTLRSLLPTAAKSDKASLLGEVVEHVKRLRKQADDVACGDSSSSCDGERGSVLSEAWPFPGECDEATVSCCDGDDGEARRVKATLCCEDRPGLNRDLTQAIRSVRGKPVRAEMMTVGGRTKSVVEVEWPPREAEEEVEGKEVGALERALKAVIENRALVGYGMGPIVLGQKRARDCYGSPSSEVDSAFLLRNRNFC 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2501 261 SMART finulus 51 100 IPR011598 GO:0046983
Ssu6g2501 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Ssu6g2501 261 PANTHER OS09G0463900 PROTEIN 26 239 - -
Ssu6g2501 261 Gene3D - 143 223 - -
Ssu6g2501 261 Gene3D - 38 101 IPR036638 GO:0046983
Ssu6g2501 261 PANTHER TRANSCRIPTION FACTOR BHLH30 26 239 IPR045847 GO:0003700|GO:0006355
Ssu6g2501 261 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Ssu6g2501 261 MobiDBLite consensus disorder prediction 36 56 - -
Ssu6g2501 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 101 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2501 Ssu-Chr6 58954854 58955877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2501 35 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.850 1.38e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g2501 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2501 - - gmx:100816394 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2501 6 58954854 58955877 Ssu6g2501 6 58954854 58955877 ECH