Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2497 ATGTTCTCAAAGCTTCATCCACACCAGCAACAGCAACAGCAACAGCAACAACCGTTTCAATTCTCTCGGGAATGTCAAACATCCGAGGACGACGACAGCCCAAGCAGCGGCGGCCCCACCACCGCCGCTGCCGCCCAGAAGCCCGCCTCGGGCGGCGATGGGGCCACAATTGAAGTCGTGCGGCGGCCCAGGGGCCGCCCGCCCGGGTCCAAAAACAAGCCCAAACCGCCTCTCATAATAACGCGCGAGCCCGAGCCCGCGATGAGCCCATTTATCTTAGAAATCTCGGGAGGAAGCGACGTCGTCGAGGCCCTGGCCCGGTTCAGCAGCAGAAAGAACACGGGCTTGTGCATCCTCACCGCTTCGGGAACCGTGGCCAACGTCACGCTCCGTCAACCCTCCGTCACTCCCGGCGCCACCGTCACGTTTCACGGCCGCTTTGATATTCTCTCCATGTCCGCCACGTTCCTCCTCTCGCCGGCGATCCCGCCCGGCGGTTTCGCCGTCTCGCTTGCCGGACCGCAGGGGCAGATCGTCGGCGGACTCGTCGTCGGAAGGCTGCTCGCCGCCGGGACGGTCTTTGTGATCGCCGCGTCGTTCAACAACCCGTCGTACCACCGGCTGTCGTCGTCGTCGGAGGACGCTCAGAACAACTCCGGCGGCGGGGACTCGCAGTCGCCGCCGGTGTCCGGCGGCGGGGCCGAGAGCGGGCGCGTGCAGGCGGAGTCGTGCATGTACAGCTCTCACCTTCCTTCGGATGTGATTTGGGCTCCGACCGCCAGACCTCCTTTCTGA 795 0.6491 MFSKLHPHQQQQQQQQQPFQFSRECQTSEDDDSPSSGGPTTAAAAQKPASGGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPEPAMSPFILEISGGSDVVEALARFSSRKNTGLCILTASGTVANVTLRQPSVTPGATVTFHGRFDILSMSATFLLSPAIPPGGFAVSLAGPQGQIVGGLVVGRLLAAGTVFVIAASFNNPSYHRLSSSSEDAQNNSGGGDSQSPPVSGGGAESGRVQAESCMYSSHLPSDVIWAPTARPPF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2497 264 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g2497 264 CDD DUF296 90 200 IPR005175 -
Ssu6g2497 264 MobiDBLite consensus disorder prediction 1 84 - -
Ssu6g2497 264 PIRSF ESCAROLA 1 255 IPR014476 GO:0003680
Ssu6g2497 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 262 IPR014476 GO:0003680
Ssu6g2497 264 MobiDBLite consensus disorder prediction 207 231 - -
Ssu6g2497 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 202 IPR005175 -
Ssu6g2497 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 9 262 - -
Ssu6g2497 264 MobiDBLite consensus disorder prediction 207 242 - -
Ssu6g2497 264 ProSiteProfiles PPC domain profile profile. 85 225 IPR005175 -
Ssu6g2497 264 Gene3D - 89 218 - -
Ssu6g2497 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2497 Ssu-Chr6 58904367 58905161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2497 53 263 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.674 1.62e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2497 - - gmx:100811053 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2497 6 58904367 58905161 Ssu6g2497 6 58904367 58905161 ECH
Ssu6g2497 6 58904367 58905161 Ssu1g2679 1 72618596 72619671 PCT