Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2492 ATGCTTAATTTTCAGAAATTGTCTCTTCTATTGACGTTGGTCTTTCTGCTACGGAAGCCTGTGATAGGTAAGAACCACTGCACGGATAAATGTGGACGCgttcatattaaatttccaTTTTATCTCAGAAACTGCAACTTGAATCACGCCACCGACTATCCCCCTGGGTTCGATCTGTTATGTACCGAAAAAAATGAGACTCTGCTGGAGCTGCCTGCTGTTCCAATAAAATTGTTTGTCAGAAACATTGATTACAATTCTCAGCAAATTGAAATATATGACCCTGAAAATTGCCTTCCCGGTCAGCTCTTGAAACTCGGCAACGCATCAATTTCTCCATTCCAATTCCCAATGCCAGATCCTTATGAATACTTTCTCTTCCCGACTAACGTTTCCTTCTTCCGTTGCGATTCAATGTCGTGCCCTATTTTGCTAGGTTTTTTCAGTGACAGTGATCTCCCTAAACTACTATCCTGCACCAAAGTGAAAGAAGTTTCGTTTGTCCAGTGGAAATATGAATCGGATTCCTTGTCTCACCCGCAGGAAGTTCTGCTTATCAAATGGTCGAAACCTGACTGTAGTTACTGTGAAACACATGGCCAGAAATGTAAATGGAAGAATGGTACTACCAACGGTGAAACTGAATGTTTCGTTTGCCCAACAAACAGGATTCCAACATCAACTATTGTACTCATTGCTACAGGTATGCAATGTCCTTTTGCCTGA 726 0.4091 MLNFQKLSLLLTLVFLLRKPVIGKNHCTDKCGRVHIKFPFYLRNCNLNHATDYPPGFDLLCTEKNETLLELPAVPIKLFVRNIDYNSQQIEIYDPENCLPGQLLKLGNASISPFQFPMPDPYEYFLFPTNVSFFRCDSMSCPILLGFFSDSDLPKLLSCTKVKEVSFVQWKYESDSLSHPQEVLLIKWSKPDCSYCETHGQKCKWKNGTTNGETECFVCPTNRIPTSTIVLIATGMQCPFA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2492 241 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 233 - -
Ssu6g2492 241 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2492 Ssu-Chr6 58764652 58765377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2492 28 226 C3H Transcription Factor Family AT2G46495 34.513 1.35e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2492 - - gmx:100816669 298.516