Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2485 ATGAAAAATCAGACGTACGCGGCACGCCGAGGCACACAGAGACAAAGAACCACTCAATTCCACTATTTCCACTTTATCCCTTCGTTCCTCTTAACTCCTTTCTTCTCACTCACAGTTCACAAACTCAGCAGCATGATGTGGGAATGGAACGAAAATGAAGACGCACTCCCCGATTCCGACCAGCCCGAACCCGATTCTCATCTCAATTTCGATTTCTTCTCTGCCCTCTCCAGACCCAAGGATTATTATAAGATACTGGAAGTGGATTACGATGCTACGGATGACGCTATTCGCTCCAATTACATTCGTCTCGCTCTGAAGTGGCACCCGGACAAGCAGAAAGACCAGGATTCTGCAACCTCGCGATTCCAAGACATAAACGAGGCCTATCAGGTTTTGAGTGATCCAGCCAAAAGGAGGGAGTATGACATAAATGGGATGCGTTACGTATATGATTACAATATCATTGATTATCTTAACCGTTACAAGGGTCTTATATTGACGTGCAATGGCCTTGGCATGAAGCATTcgatatggtaa 540 0.4463 MKNQTYAARRGTQRQRTTQFHYFHFIPSFLLTPFFSLTVHKLSSMMWEWNENEDALPDSDQPEPDSHLNFDFFSALSRPKDYYKILEVDYDATDDAIRSNYIRLALKWHPDKQKDQDSATSRFQDINEAYQVLSDPAKRREYDINGMRYVYDYNIIDYLNRYKGLILTCNGLGMKHSIW 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2485 179 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Ssu6g2485 179 SMART dnaj_3 80 138 IPR001623 -
Ssu6g2485 179 Pfam DnaJ domain 81 143 IPR001623 -
Ssu6g2485 179 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 46 179 - -
Ssu6g2485 179 CDD DnaJ 81 135 IPR001623 -
Ssu6g2485 179 ProSiteProfiles dnaJ domain profile. 81 146 IPR001623 -
Ssu6g2485 179 PRINTS DnaJ domain signature 101 116 IPR001623 -
Ssu6g2485 179 PRINTS DnaJ domain signature 83 101 IPR001623 -
Ssu6g2485 179 PRINTS DnaJ domain signature 118 138 IPR001623 -
Ssu6g2485 179 SUPERFAMILY Chaperone J-domain 78 166 IPR036869 -
Ssu6g2485 179 Gene3D DnaJ domain 73 157 IPR036869 -
Ssu6g2485 179 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 46 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2485 Ssu-Chr6 58685907 58688913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2485 74 143 C2H2 Transcription Factor Family AT1G74250 41.333 1.53e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2485 - - var:108338470 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2485 6 58685907 58688913 Ssu6g2485 6 58685907 58688913 ECH