Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2484 ATGGCACCCAGTTTTGATTGCGTTTCGAGCCTTCTCTGTGCGGAAGACAACAGTGTTTTCGACGAAAACGATTACGGGGGTTCGGTGGAGATGTTGGAGGACACGTGGCAGCATCCTAGGTATCATCGAAACCGTGGTCAAAGTGAGAACTTGGATGACCCTAATGGGTGGTTTCCGTTGCAGAGTGATGAGTGTTTGAGACTGATGGTGGAGAAGGAATGCCATCACATGCCTTGTGGTGATTACGTGAATAGGTTGAGGAGTGGGGATTTGGACTTTGGGGCCAGAAAAGATGCTATTGATTGGATTGAAAAGGTCCGAGAGCACTATGGTTTTGGACCTCTATGTGCATACCTATCCATAAACTACTTTGACCGCTTCCTTTCTGCGTATGAATTACCAAAGCAAAGAGCTTGGACAATGCAATTGTTGGCTGTGGGGTGCTTATCTCTGGCAGCCAAAATGGAAGAGACTGATGTTCCTTTGTCTCTTGATTTGCAGGTGGGTGAAtctaagtatatatttgaagCTAAAACAATACAGAGAATGGAGCTTCTGGTACTGAGCACATTGAGGTGGAGAATGCAGGCAATTACCCCTTTTTCCTTCATCGACTATTTCCTTTACAAGATGAATGATGATCAAAGTCCAATTGGAGCTTCAATTTTGCGATCCATCCAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCTTAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGAGGCCCAAACAGTTCACACGGAGAAAGCAATTTCTGTTCTGATTCAGCTTGCAGGAAAGGAGAGGGTCTTGAAGTGTGTTAAATTGATCCAAGAGCTGTCATCAAGCAGTGGTTCTGCTAAGGATGCTAGTGCTTCTGTTTCTGTCCCTTGCGTGCCCAAAAGCCCAATAGGGGTGTTGAACACTGCATGCTTCAGCTACAAAAGTGATGACACAAATGCTGCTTCATGTGCAAATTCTTCACATAACAATAGTCCAGATGCTAAAAGGAGGAGGCTAAACAAAACCTTTGGAGAATAG 1068 0.4448 MAPSFDCVSSLLCAEDNSVFDENDYGGSVEMLEDTWQHPRYHRNRGQSENLDDPNGWFPLQSDECLRLMVEKECHHMPCGDYVNRLRSGDLDFGARKDAIDWIEKVREHYGFGPLCAYLSINYFDRFLSAYELPKQRAWTMQLLAVGCLSLAAKMEETDVPLSLDLQVGESKYIFEAKTIQRMELLVLSTLRWRMQAITPFSFIDYFLYKMNDDQSPIGASILRSIQLILSTVRGIDFLEFRPSEIAAAVAISVVGEAQTVHTEKAISVLIQLAGKERVLKCVKLIQELSSSSGSAKDASASVSVPCVPKSPIGVLNTACFSYKSDDTNAASCANSSHNNSPDAKRRRLNKTFGE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2484 355 SUPERFAMILY Cyclin-like 180 255 IPR036915 -
Ssu6g2484 355 CDD CYCLIN 96 188 IPR013763 -
Ssu6g2484 355 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 349 - -
Ssu6g2484 355 Gene3D - 67 277 - -
Ssu6g2484 355 MobiDBLite consensus disorder prediction 332 355 - -
Ssu6g2484 355 SMART cyclin_7 101 189 IPR013763 -
Ssu6g2484 355 Gene3D - 79 196 - -
Ssu6g2484 355 SUPERFAMILY Cyclin-like 56 195 IPR036915 -
Ssu6g2484 355 SMART Cyclin_C_2 198 324 IPR004367 -
Ssu6g2484 355 PANTHER CYCLINS 1 349 IPR039361 -
Ssu6g2484 355 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Ssu6g2484 355 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Ssu6g2484 355 MobiDBLite consensus disorder prediction 341 355 - -
Ssu6g2484 355 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2484 Ssu-Chr6 58649466 58651517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2484 55 334 Core Cell Cycle Gene Families AT2G22490 49.488 4.19e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2484 K18810 - gmx:100803873 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2484 6 58649466 58651517 Ssu6g2484 6 58649466 58651517 ECH