Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2482 atgGGAGAAGATTGTGGAACCTGGATCCCGGAGCTGCATTTTGATTGGCAATCTCCCAATTTGAGTTCCTTTGATGCTGCACCCTTCGATGTGGGGAAGCAAAATGGTAGTTCTGCAGCTATGAATCCGGTTGCCAACATGGTCACAAGAAATGCGACAATGCCAGCTTATGTGTCCTCTGCGCTACCTCATTCGCAGTTGGGACATTCTGGTGAACCTCATGGTTGGTTTTATTGTTTGCCTCGCTTTCGACAGGGATTTACTGCACCTGCTCGAAACTTCAGTGCAGAGGAAAAACTCCCTGCTGGCCACGCAAAAGGTTTTAGGGAGGAAATTGTGCCGAATGGGGAATCAGGTTTCCCTCAGAAGCAATTCCTGGTTATTGATCAAACTGGTGATCAAACAACTCTGGTTTATAGTTCAAGGTTTAGGGGTCCTGTTGAGTGCCTTGCTTCCTGGGATTCAAAGCTGCATGGTTCTAACAATTTGAACAATGGGAATGAATTGCTTTCTTTAAGGAGAGATGTGAATCATGTGGTTGGACATGGACCAACTTTGGATGATAAAGTTGATGAAAATCAAGGAACTGATGATGACATTGAAAGTGAGATGCATGAAGACACAGAGGAAATCAATGCATTGCTTTACTCTGACAGTGATGGTTATTCCACtgaggatgatgatgatgaagttACCAGCACAGGACATTCACCCAGTACAATGACCACTCATGATAACCAGGAAGAACCCGATAGCGGAACCGCGGAAGAAGTTGCTAGCTCGGTTGGAGAAACAAAGAAGCGGAAGCTATGGGACGGGGCTTATGATGATGACGTGCAGATCATGGACACTGCTAGTTCTCTGAATGGTAAAAGACCCTTTGAAGTGGGAGATGATGCAGAATCAAGATGCTCTCGTGGTGGCAACAGTAGTCGAGGGTCAGGTGAAATGGGTTCCTTGTCAGGTAATAAGAAGATAAGAAAGGAGAAGATTCAAGATGTTCTGAGCATTCTGCAATGCATAGTTCCTGGTGTGAAGGACAAGGACCCAATTAGGCTTCTTGATGAAGCCATACGTTGCTTGAAATCATTGAAACTCAAGGCTAGGGAACTTGGGCTTGATGCTATATAA 1131 0.4421 MGEDCGTWIPELHFDWQSPNLSSFDAAPFDVGKQNGSSAAMNPVANMVTRNATMPAYVSSALPHSQLGHSGEPHGWFYCLPRFRQGFTAPARNFSAEEKLPAGHAKGFREEIVPNGESGFPQKQFLVIDQTGDQTTLVYSSRFRGPVECLASWDSKLHGSNNLNNGNELLSLRRDVNHVVGHGPTLDDKVDENQGTDDDIESEMHEDTEEINALLYSDSDGYSTEDDDDEVTSTGHSPSTMTTHDNQEEPDSGTAEEVASSVGETKKRKLWDGAYDDDVQIMDTASSLNGKRPFEVGDDAESRCSRGGNSSRGSGEMGSLSGNKKIRKEKIQDVLSILQCIVPGVKDKDPIRLLDEAIRCLKSLKLKARELGLDAI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2482 376 MobiDBLite consensus disorder prediction 304 318 - -
Ssu6g2482 376 PANTHER TRANSCRIPTION FACTOR BHLH145 1 374 IPR037546 -
Ssu6g2482 376 MobiDBLite consensus disorder prediction 192 206 - -
Ssu6g2482 376 PANTHER TRANSCRIPTION FACTOR BHLH145 1 374 - -
Ssu6g2482 376 MobiDBLite consensus disorder prediction 234 248 - -
Ssu6g2482 376 MobiDBLite consensus disorder prediction 290 323 - -
Ssu6g2482 376 MobiDBLite consensus disorder prediction 181 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2482 Ssu-Chr6 58558567 58559697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2482 75 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 32.770 6.01e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2482 - - gmx:100812109 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2482 6 58558567 58559697 Ssu6g2482 6 58558567 58559697 ECH
Ssu6g2482 6 58558567 58559697 Ssu1g3185 1 83088882 83093802 PCT