Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2479 ATGCGCTACCTCACTTGCAACGCCGAGTCCACAATAGCCATATGCGACCCCCACTCCCTCAAGAAGAAGAAACCAAAAAGCCCAACGAAGGCCCAGAACATCAGGCACTTCGCCTATTCCGACATCCTAGCCGCCACCAACGCCTTCTCCGCCGACGCGTTCCTCGGCAAAGGCAGCCACGGCAGCGTCTACAAAGCCACCCTTGACGGCGGCGCCCTCGTCGCCGCCGTCAAAAAAACCAAACCCTCCAACGAGATCGAAATCCTCTCCCACGTCAAAAGCCCACGCCTCGTAAACCTCATCGGCTTCTGCAACGACCAaagtaacaacaacaaactCATCGTGGTCGAGTACATGCCCAACGGTTCGCTCCACGAGCTTCTCCACTCGAAAACGGTTCAACCCCCCGGTTGGACAGCCAGAATCCGGTTCGCCGTTCAGGTCGCGAAGGCGGTTCGCGGTTTACATTCTTCTGAACCGCCCGTTATTCACCGCGACATTAAGTCGTCCAATGTCTTAATCGACGAAAGGTGGAACGCGCGACTCGGCGACTTCGGACTCGCGCTGAGGGGACATGTGGCGGATTTTCGCGTGCCACCGGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTTGCGCCGGGGGATGTGAGTTTCAAGAGCGATGTCTTCAGTTTCGGGGTGTTGCTGCTTGAGATCGCCAGTGGGAGGCACGCCATTGACGTGAGGCACAGTCCTCCCTCGGTGTTGGATTGGGCGGTGCCGTTGGTGCGGCGCGGCGAGTTTGAGGAAATTTGTGACCCGCGGATCGGGACGCCGCCGGACATGGCAGCGTTCCGGCGGATGGTGGTGCTGGCGGCGCGGTGCGTGCGGTCGACGGCGGAGAGGCGGCCGTCGATGGCGGAGGTGGTGGAGTGCCTTGCGGCTGTGAGGAAGAGGTTTCGTGCGCCGGTGGTGTGGAAGAGACTGAGGAGGCGCGTGGCGGCGCGTGGTGTGACATTCCCTGATTGGGACTGTAGTGAGGAAGTTGCAAGGGTGGTTAAGGTAGCGGGTAGGAGGAATGGGAAGGTATCTAGTGTCTCGGGTGTAGAGTATGAGAGTGGACCCGCGAATCCAGCTGTTAGGTCTAGATCCGTTGGTTCTGGTTTTTTCGgggatataaaaattaactcgGGTTTGGGTGGGTACCCGAACCAAATTGGGTTCGGGTTCGGAAATAGGGATGGGAAAGTGGCGGTGACGAGGCTAAAGAGATCGAGGTCTATGGGGTTTTTGAGACATTATGGTAGTGAGTCGAAGACGTGTCATAAGAGACATGAcggtaataataatgatatggTTCGTTCGACAGAGATGGCACTGTCCAAGTTGGCTATTATGGACAAGAAGTTGGAACAGAGAATGCAAGAAAAACCGTTGGTTGATTATTCACATCGTGTTGAGAATCAAAGTAATTGA 1458 0.548 MRYLTCNAESTIAICDPHSLKKKKPKSPTKAQNIRHFAYSDILAATNAFSADAFLGKGSHGSVYKATLDGGALVAAVKKTKPSNEIEILSHVKSPRLVNLIGFCNDQSNNNKLIVVEYMPNGSLHELLHSKTVQPPGWTARIRFAVQVAKAVRGLHSSEPPVIHRDIKSSNVLIDERWNARLGDFGLALRGHVADFRVPPAGTLGYLDPCYLAPGDVSFKSDVFSFGVLLLEIASGRHAIDVRHSPPSVLDWAVPLVRRGEFEEICDPRIGTPPDMAAFRRMVVLAARCVRSTAERRPSMAEVVECLAAVRKRFRAPVVWKRLRRRVAARGVTFPDWDCSEEVARVVKVAGRRNGKVSSVSGVEYESGPANPAVRSRSVGSGFFGDIKINSGLGGYPNQIGFGFGNRDGKVAVTRLKRSRSMGFLRHYGSESKTCHKRHDGNNNDMVRSTEMALSKLAIMDKKLEQRMQEKPLVDYSHRVENQSN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2479 485 PANTHER OS01G0253100 PROTEIN 1 332 IPR045271 GO:0004714|GO:0006468
Ssu6g2479 485 SUPERFAMILY Protein kinase-like (PK-like) 33 315 IPR011009 -
Ssu6g2479 485 ProSitePatterns Protein kinases ATP-binding region signature. 55 79 IPR017441 GO:0005524
Ssu6g2479 485 Gene3D Transferase(Phosphotransferase) domain 1 119 321 - -
Ssu6g2479 485 SMART serkin_6 49 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2479 485 ProSiteProfiles Protein kinase domain profile. 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2479 485 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 332 - -
Ssu6g2479 485 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Ssu6g2479 485 Pfam Protein kinase domain 52 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2479 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2479 Ssu-Chr6 58456434 58457891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2479 30 307 Receptor kinase-like Gene Family AT3G59420 42.905 3.42e-64 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu6g2479 Pkinase 6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2479 - - vra:106764162 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2479 6 58456434 58457891 Ssu6g2479 6 58456434 58457891 ECH
Ssu6g2479 6 58456434 58457891 Ssu1g3183 1 83048193 83049899 PCT