Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2478 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGAGCCGCCGCAAGCGCCGGCGGCGGCGAGTTACGACTCGCTCGGAAACTCGGCCGCAAGAGGCAAAATCGGCGGCGGCGAGGGGCGGAAGGGCGCGTTCGGCGCGGCGGCGCTGCGGTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGGCGGCCGGAGAGGACGGCACGCTCGAGGCCGTCATCTGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGCAAGGAGATGGACGGCGAGATGACCTCCTTCCACCACCGCcagccgccgccgccgccgccgctgCACCACCACCAATTCTCCCCGTACTACCACCACCGCGTCCCGCAGCACCCCGCCGCCGCCGGctacctccaccaccaccacctcgcCACTCCTCCGATGGCCCAGCACCGTCCGCTGGCCCTACCCGCGGCGGCCTCCGGCGGCGGACTCAGCCGCGACGAAGATGACATGTCGAATCCGAGCAGCAGCGGCGGTGGTGCCGGCGGAGGATCGAAGAAACGGTTCAGAACGAAGTTCTCGCAGGAACAGAAGGATAAGATGCTCACATTCGCGGAACAAATCGGGTGGAGAATTCAGAAGCACGATGAAGCTGCGGTGGAACAATTCTGTGCTGAGACCAATGTGAAGCGAAACGTTCTCAAAGTTTGGATGCACAATAACAAGCACACTCTCGGCTGGGAAATTCATAAAGATTCAAAGAGATTGATGATCTTAAGTGAGTGA 816 0.5833 MEFDEQEEQEEEMGMPEPPQAPAAASYDSLGNSAARGKIGGGEGRKGAFGAAALRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEAVICAACNCHRNFHRKEMDGEMTSFHHRQPPPPPPLHHHQFSPYYHHRVPQHPAAAGYLHHHHLATPPMAQHRPLALPAAASGGGLSRDEDDMSNPSSSGGGAGGGSKKRFRTKFSQEQKDKMLTFAEQIGWRIQKHDEAAVEQFCAETNVKRNVLKVWMHNNKHTLGWEIHKDSKRLMILSE 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2478 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 256 - -
Ssu6g2478 271 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Ssu6g2478 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 50 256 - -
Ssu6g2478 271 SUPERFAMILY Homeodomain-like 181 254 IPR009057 -
Ssu6g2478 271 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Ssu6g2478 271 Gene3D - 181 257 - -
Ssu6g2478 271 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 252 IPR006455 -
Ssu6g2478 271 MobiDBLite consensus disorder prediction 1 44 - -
Ssu6g2478 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Ssu6g2478 271 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2478 Ssu-Chr6 58414654 58416113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2478 1 261 ZF-HD Transcription Factor Family AT4G24660 51.527 4.88e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu6g2478 ZF-HD_dimer 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2478 - - gmx:100776421 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2478 6 58414654 58416113 Ssu6g2478 6 58414654 58416113 ECH
Ssu6g2478 6 58414654 58416113 Ssu1g3181 1 83014570 83015756 PCT