Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2473 atgaaaaagaaacgAAAAGAAAGCGAGGCCAGCGAGCGGTCGAACTTGCCCGAGATTTCGAAGTCGCATTGCTCGCTGGAACGGTGTTCTCGGTTGAACAAACGGTGCAGGGAAGACGGCGTGGCCACGGTTCCCCCGTGCGGCACGGCGTTACTTTTAACGTCGTCAAGGGGACTGAAGCGGAAGATAGGGTGCATTGATAGGGCCACCCGGATGGGGAACAACGGGAGGATCGGGGACGATTACGTCACCGGGGGCGGCACGATCGGGCAGGGGAAGTTCGGGTCGGTGACGCTGTGCCGCGCGCGTGCGGGGGGCGCCGAGTACGCGTGCAAGACGCTGCGGAAGGGGGAGGAGACGGTGCACCGGGAGGTGGAGATAATGCAGCACGTGTCGGGGCACCCGGGGGTGGTGACGCTGGAGGCGGTGTACGAGGACGCGGAGTGTTGGCATCTGGTGATGGAGTTGTGCTCGGGGGGGAGGTTGGTTGATAGGATGAGGGAGGGTCCGTGTTCGGAACACGTGGCCGCTGGGATACTGAAGGAGGTGATGTTGGTGGTTAAGTATTGTCATGATATGGGGGTGGTGCATAGGGACATTAAGCCTGAGAATATTCTGCTCACTGGGTCGGGGAGAATCAAGCTCGCGGATTTCGGCCTCGCCATCAGGATTTCCGAGGGTCAGAATTTGACAGGTGTAGCTGGGAGCCCTGCATATGTTGCACCGGAAGTGTTGTTGGGTAGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTGGTCTTCCATTTAAAGGAGATTCACCGGAAGCAGTTTTTGAGGAAATTAAGAATGTCAAACTAGATTTCCAAACAGGGGTGTGGGAATCAATATCTAAATCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGGCATCCATGGATATTGTTCTACACGGAGCGTACATTAAAGTTGTTGCCcgttaaatcaaaattgaaactcCAAAATGCAGCTGCTTGCCACAAGTTGGTTGCTGCACCTGAATCTGGGTTAGGAGGAAACAGGAAAGATGATGGCTCCCTTGACGAGGGTTCAAGCCCGTTTTCATCCTCTGAAAGTTGCAATTCAGAATATCATGATGATTGTGGTTGGATTGATGCACTTGCCACTGCAGTTTCACGTGTGAGGATATCCGAAACAAAGAGGAGCAAGTTGTGGGGCCCCACTGGTCCAATTGATCAGCAAGGTTCATCTAATATGAAGACTAACCTCTGTAAAGCATTCTGA 1332 0.5173 MKKKRKESEASERSNLPEISKSHCSLERCSRLNKRCREDGVATVPPCGTALLLTSSRGLKRKIGCIDRATRMGNNGRIGDDYVTGGGTIGQGKFGSVTLCRARAGGAEYACKTLRKGEETVHREVEIMQHVSGHPGVVTLEAVYEDAECWHLVMELCSGGRLVDRMREGPCSEHVAAGILKEVMLVVKYCHDMGVVHRDIKPENILLTGSGRIKLADFGLAIRISEGQNLTGVAGSPAYVAPEVLLGRYSEKVDIWSSGVLLHALLVGGLPFKGDSPEAVFEEIKNVKLDFQTGVWESISKSARDLVGRMLTRDISARITADEVLRHPWILFYTERTLKLLPVKSKLKLQNAAACHKLVAAPESGLGGNRKDDGSLDEGSSPFSSSESCNSEYHDDCGWIDALATAVSRVRISETKRSKLWGPTGPIDQQGSSNMKTNLCKAF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2473 443 ProSiteProfiles Protein kinase domain profile. 83 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2473 443 Gene3D Transferase(Phosphotransferase) domain 1 163 359 - -
Ssu6g2473 443 CDD STKc_CAMK 86 329 - -
Ssu6g2473 443 MobiDBLite consensus disorder prediction 425 443 - -
Ssu6g2473 443 Gene3D Phosphorylase Kinase; domain 1 86 162 - -
Ssu6g2473 443 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 16 436 - -
Ssu6g2473 443 MobiDBLite consensus disorder prediction 366 388 - -
Ssu6g2473 443 MobiDBLite consensus disorder prediction 419 443 - -
Ssu6g2473 443 SUPERFAMILY Protein kinase-like (PK-like) 79 351 IPR011009 -
Ssu6g2473 443 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Ssu6g2473 443 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 436 - -
Ssu6g2473 443 SMART serkin_6 83 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2473 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Ssu6g2473 443 Pfam Protein kinase domain 87 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2473 Ssu-Chr6 58226426 58229756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2473 82 330 EF-hand Containing Proteins AT4G04720 45.385 4.85e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g2473 Pkinase 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2473 - - gmx:100809977 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2473 6 58226426 58229756 Ssu6g2473 6 58226426 58229756 ECH
Ssu6g2473 6 58226426 58229756 Ssu1g3142 1 82297003 82299352 PCT