Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2465 ATGATCGTGCCTgttcccttcttcttcttcttcttcttctccttctggTGCCACCGGTCACCGCACAGTTCCAAAActcgccgccgccgccgccgccgccgcgtAGACACTTTCACGAGGATAAGGTTCGACAAGACCATGGCTGCGGTTTTGGTCATCCTCGTCGTGGTTTTCTTCGCGTTGGGCTTCGTCTCCATCTACACGCGCCAATGCTCGGAGCGGAGGCTCAGAGGGAGGCTCGACCTCGCCGTGGCGATCGCCGGCGGCATCGAGCGCCTGCAGCACCACGGCCTCGACGCGGCGATAATTGACACGTTCCCGACCTTCGTCTACTCCGAGGTAAAGGCCCTCAAGATTGGAAGGGCCGCGCTAGAATGCGCCGTGTGCCTCAACGAGTTCCGCGACGACGAAACGCTGCGTCTGATCCCGAAATGCTGCCACGTGTTCCACCCCGATTGCATCGACGCATGGCTGGCGAATCACTCCACGTGTCCCGTCTGTCGCGCCAACCTCGCGCCCAAGCCCGAGGACGCGCCTCCTTCAGTTGAGATTCAGATGCAAGATGAGGCCCCGGCCCAGCCCAATCGGCCCAATACAGAGCCCGATTATGATCCGAGTTCGATTAACCCGGTCGACGAGGGTGAAAGAATAGTTACGGAGCCACCGAGTGTTAATTTAGATGATCAGAACCATCCGGTTCGGACCGCTCGGTCGAGGTCGACCGGTTCGGATTGGGAGGTTGTTTCCGCGGTCTCACTCGACGGGTCACTTGCTGGTTCGGCCGGGCGAGGACTGCGAGCGGTTCACGCTGCGGTTGCCGGAGGAGGTGCGGAACCGGCTCGTGGGTTCGGCGACGCTGAACCGGACGAGGAGTTGCGGGGTGACGTGGCAGCGAGAGAGCAGTGGGAGGAGGGGTTACCGGACGAGGAGCGTGGGGAGAAGTTATCTGCAATACGAGCGGTTCGGTGGGGAGGCCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCGCCGTTTTGGGGTAG 1023 0.5767 MIVPVPFFFFFFFSFWCHRSPHSSKTRRRRRRRRVDTFTRIRFDKTMAAVLVILVVVFFALGFVSIYTRQCSERRLRGRLDLAVAIAGGIERLQHHGLDAAIIDTFPTFVYSEVKALKIGRAALECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLANHSTCPVCRANLAPKPEDAPPSVEIQMQDEAPAQPNRPNTEPDYDPSSINPVDEGERIVTEPPSVNLDDQNHPVRTARSRSTGSDWEVVSAVSLDGSLAGSAGRGLRAVHAAVAGGGAEPARGFGDAEPDEELRGDVAAREQWEEGLPDEERGEKLSAIRAVRWGGPVGPVGVHVDPAVLG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2465 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 174 IPR013083 -
Ssu6g2465 340 PANTHER RING-H2 FINGER PROTEIN ATL11 29 243 - -
Ssu6g2465 340 MobiDBLite consensus disorder prediction 223 239 - -
Ssu6g2465 340 MobiDBLite consensus disorder prediction 220 239 - -
Ssu6g2465 340 PANTHER RING FINGER DOMAIN-CONTAINING 29 243 - -
Ssu6g2465 340 SUPERFAMILY RING/U-box 104 181 - -
Ssu6g2465 340 Pfam Ring finger domain 125 168 IPR001841 -
Ssu6g2465 340 MobiDBLite consensus disorder prediction 191 205 - -
Ssu6g2465 340 CDD RING-H2_PA-TM-RING 125 168 - -
Ssu6g2465 340 MobiDBLite consensus disorder prediction 189 214 - -
Ssu6g2465 340 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Ssu6g2465 340 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2465 Ssu-Chr6 58031218 58032240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2465 42 185 Rapid Response to Elicitors AT3G05200 50.955 3.58e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2465 K10664 - gmx:100815982 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2465 6 58031218 58032240 Ssu1g2733 1 73393902 73396341 PCT