Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2464 ATGCAAAAGGAGAGTCCTCTCATCAGACTCCACAGTTATGATCATGCATGGCTCGCTCTGTTGCACCTTCTCATTCACATCTCACCGCCGGTAACCGGTCAACCGGTAACACCCACAGTGGAACCCGACAGCAACAAATCCGTGGTCACCATCATGGCCATCGTCGCCGTCATGTTCCTCATCTCAGccttcctctccctctactcTCGCAAATGCTCCGACCGGCAAGCCCAGACACGTGGCAACAGGCTGGACCTCGCCGCTCCCACCGGCGCAGCCGGTAACCCGTCGCAAACGGAACCCAACGGCCTCAACCAAGCCACCATCGACACGTTCCCCACGTTCCTCTATTCCGACGTGAAGGGTCTCAAAATCGGAAAAGACACGGACGACGAAACCCTCCGCATGATCCCCAAATGCTGCCACGTGTACCACCCCGACTGCATCGACGTTTGGCTAGCCTCTCACACCACTTGCCCCGTGTGCCGCGCCAACCTCGTTCAACAACCCGAAGACGACATAGACATAAACATCAACGCGAACATGAACATGCCTCCAATGTTGTCCATTCAGATACCCGATCATGAACAAGAACATGAACACGAACACGAAGGTGAACACGAATACGAGACTGTTATTAGTGAGGAACAGAAGAGAGACAGTGACGTGGAGTCACCGAAGGTGGACTTGCTTCGGAGGATTCGCACGTTGCATCAGAGCCGTCCATCGCGGTCTAGATCAACAGGGTTCTTGTCTGCGCTCTTGTTTCCGCGGTCAAACTCGATGGGTCAACTGGCGCAGCCTGGTGAGAACTATGAGAGGTTTACGCTAAGGTTACCCGAGGAGGTACGAAGCCAGATGGTGAACTCGACGACGCTGAAGCGTGCGAATAGCTGCGTGTGCTTTACGAGAATGAGCAGTGGCACGTGGGGGTATAGGACGAGAAGCGCGGGTGGTGGACGTGGGAGAGGGTGTGTGCAGTACGAGAGgttcagtggtggtggtgaggaACAGTGGGGTTTCACTTTGACGCCACCGAGTCTCGTTAGGAACGGTTGGAATAGATCCGCGAGAAAATCACCGGTTCAGCGCTCGGGTGTGGCGTTGGATAACAATGCTAGTGAGCGATCCTCTGACTTCTTGCATCTTGGGTAG 1155 0.5299 MQKESPLIRLHSYDHAWLALLHLLIHISPPVTGQPVTPTVEPDSNKSVVTIMAIVAVMFLISAFLSLYSRKCSDRQAQTRGNRLDLAAPTGAAGNPSQTEPNGLNQATIDTFPTFLYSDVKGLKIGKDTDDETLRMIPKCCHVYHPDCIDVWLASHTTCPVCRANLVQQPEDDIDININANMNMPPMLSIQIPDHEQEHEHEHEGEHEYETVISEEQKRDSDVESPKVDLLRRIRTLHQSRPSRSRSTGFLSALLFPRSNSMGQLAQPGENYERFTLRLPEEVRSQMVNSTTLKRANSCVCFTRMSSGTWGYRTRSAGGGRGRGCVQYERFSGGGEEQWGFTLTPPSLVRNGWNRSARKSPVQRSGVALDNNASERSSDFLHLG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2464 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 167 IPR013083 -
Ssu6g2464 384 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 320 - -
Ssu6g2464 384 CDD RING-H2_EL5_like 131 163 - -
Ssu6g2464 384 SUPERFAMILY RING/U-box 129 169 - -
Ssu6g2464 384 Pfam Ring finger domain 131 163 IPR001841 -
Ssu6g2464 384 PANTHER RING FINGER DOMAIN-CONTAINING 1 320 - -
Ssu6g2464 384 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2464 Ssu-Chr6 57996527 57997715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2464 45 291 Rapid Response to Elicitors AT2G35000 33.208 9.06e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2464 K10664 - gmx:100814384 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2464 6 57996527 57997715 Ssu6g2464 6 57996527 57997715 ECH