Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2462 atggccCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGGTTGCAAAGACTACTTTTACTCGTTAGTAGGAGGAGGAAGCCACGACTATGgaatcaccaccaccaccaacaataaCATAGACCACACCCTGCATGCAAATTGGGATTCATCTTCTCCTTCAGTGTTGCAAACTGTCAAAGAGCAATGGGATTCACACTCCTCCCCTGAAGCCTGCACTGTTGATCAATCCCTCCCCGGAGCTTTCCCTCCTCCTCCTTCCTCCACCGAAGCCACCACAAGCCGCCGCAAACGCCGTCGTACCAAGAGCGCCAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGAAGTTGAGCGCAATCGAAGGAAACAGATGAACGAGTACCTCGCTGTGCTTAGATCTTTGATGCCTCCATCTTATGTACAAAGGGGTGATCAAGCCTCAATCATTGGTGGCGCCATTAACTTCGTGAGGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGTGCCAAAAGAGGACAAAGGAGCAAGGGCAGGTGAGTGGTGGCTTCTCTGATTCATCACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTACTCGACACGTGCGACACAGAGCAGCAGAGGCTACCCTGGCACGTGCGAGGCCAACATGGCACGGAACCATTCATGGGCCGTAGCGGACATAGAAGTGACCTTGGTGGATGGCCATGCCAACATAAAGATACTCTCGAAGAAACGACCCGGGTTGCTTTTGAAGATGGTTGTTGGGCTTCAAAGTTTGGGATTCAGCATTCTCCACCTTAATGTTACCACTGTGGACGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGACATTGCAGCTGCTGTGAATCAATTATCACGCACGGTTCAGGAGGAAGCTGTTTTCAGCTGA 960 0.4938 MALEAVVFPQDPFTYGCKDYFYSLVGGGSHDYGITTTTNNNIDHTLHANWDSSSPSVLQTVKEQWDSHSSPEACTVDQSLPGAFPPPPSSTEATTSRRKRRRTKSAKNKEEIENQRMTHIEVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVRELEQLLQCMKCQKRTKEQGQVSGGFSDSSPFAEFFMFPQYSTRATQSSRGYPGTCEANMARNHSWAVADIEVTLVDGHANIKILSKKRPGLLLKMVVGLQSLGFSILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDDIAAAVNQLSRTVQEEAVFS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2462 319 ProSiteProfiles ACT domain profile. 243 319 IPR002912 -
Ssu6g2462 319 Pfam Helix-loop-helix DNA-binding domain 115 166 IPR011598 GO:0046983
Ssu6g2462 319 CDD bHLH_AtFAMA_like 117 190 - -
Ssu6g2462 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
Ssu6g2462 319 Gene3D - 103 185 IPR036638 GO:0046983
Ssu6g2462 319 PANTHER MAX DIMERIZATION, MAD 1 318 - -
Ssu6g2462 319 MobiDBLite consensus disorder prediction 67 111 - -
Ssu6g2462 319 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 318 - -
Ssu6g2462 319 SMART finulus 120 171 IPR011598 GO:0046983
Ssu6g2462 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 181 IPR036638 GO:0046983
Ssu6g2462 319 SUPERFAMILY ACT-like 240 312 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2462 Ssu-Chr6 57959775 57962386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2462 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.191 7.20e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g2462 HLH 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2462 - - ccaj:109795426 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2462 6 57959775 57962386 Ssu6g2462 6 57959775 57962386 ECH
Ssu6g2462 6 57959775 57962386 Ssu1g3131 1 81855612 81857147 PCT