Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2461 ATGGCTATCAAACACAGAAAGCTCTTCCCTGAACCAACAACCACAAACCAATCCCAAGATTGCTACGGCTTTTGCGACCCAGCATGCCCTTACAACTGTTACTCTAACCCAGACTACTACTtctctccaccaccaccaccgccatcaCACTCGAGCCAAGTTAACCACATCTCCTCCTACTTGATCATCCTCGTTACTCTGTTCGCGGTCATTTTTGTTGTGGTGGGTTTCTACGTGATCAGAGTGAAGTGCTATGCCGCATGGTGTGGGTGGAGACACAGCGGATCCGTTCCCTCAGACCCCACCGAGGAGTTTCTCAACGAGAACCAAGTTGATCACCCCGTGTGGCTCATCGCCACGGTGGGGTTGCAACAATCGATCATAAACTCCATCGCGGTGTGCAAGTACAAGAAAGATGAAGGGCTGGTTGAAGGAACCGAGTGTTCGGTGTGCTTGAACGAGTTCCGAGAAGAAGAGACCTTGAGACTCTTGCCCAAGTGTAACCATGCGTTTCACATCCCTTGTATTGACACTTGGTTGAGATCGCACACCAATTGTCCTCTCTGCCGAGCCGGTATTGTCTCTAACAGGGTCGCTTCCGAATCAGCCGTGTCGAATTCGGGTTCAATGGAGCAAGAAAATGCAAATTTGGGAAGGAATCAAGAGACCCTCTTAGAGAATTCTCGGAACGAAGAAGGTGGGTTAAGCAGCAGCATGGTTGAAAACAGAACTGCTAGAGGGGAATCGAGTGAAGCACTAGATGAATCAAATTCTAAGGAGAGGGTAAATGATCCAGCTCAGAACAATCAGGTTCTGAATATTGAGATTCAGACAGAGATGGGGTCTGTTTCGACCGATCCAAGTCCAATACTGTCGTCGAATTCTTGTTCAGCAGAATCTGAAAGGCATCGTGTTGTTGATGATCACATCCAAGATGACATAATGTTGCACACGGTTAATCTACGGAAGCAAGAGCAAGGTGGTGATTGCTACTCAAAAACGTGTAAAACAATGCGTCGTTCCTCAATTGAAGAGTTGTTGCACATGAGCCCGGTATCTATGAAAAGATCATTCTCCCGTTCCATGAGTCTGAACTCTAAACTCAATTCATCCCTATTAGAGTTTTCAACCTGTTAG 1137 0.4573 MAIKHRKLFPEPTTTNQSQDCYGFCDPACPYNCYSNPDYYFSPPPPPPSHSSQVNHISSYLIILVTLFAVIFVVVGFYVIRVKCYAAWCGWRHSGSVPSDPTEEFLNENQVDHPVWLIATVGLQQSIINSIAVCKYKKDEGLVEGTECSVCLNEFREEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNRVASESAVSNSGSMEQENANLGRNQETLLENSRNEEGGLSSSMVENRTARGESSEALDESNSKERVNDPAQNNQVLNIEIQTEMGSVSTDPSPILSSNSCSAESERHRVVDDHIQDDIMLHTVNLRKQEQGGDCYSKTCKTMRRSSIEELLHMSPVSMKRSFSRSMSLNSKLNSSLLEFSTC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2461 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 199 IPR013083 -
Ssu6g2461 378 MobiDBLite consensus disorder prediction 203 245 - -
Ssu6g2461 378 SMART ring_2 148 189 IPR001841 -
Ssu6g2461 378 Pfam Ring finger domain 147 190 IPR001841 -
Ssu6g2461 378 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 367 - -
Ssu6g2461 378 MobiDBLite consensus disorder prediction 203 269 - -
Ssu6g2461 378 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Ssu6g2461 378 CDD RING-H2_PA-TM-RING 147 190 - -
Ssu6g2461 378 SUPERFAMILY RING/U-box 138 195 - -
Ssu6g2461 378 MobiDBLite consensus disorder prediction 247 261 - -
Ssu6g2461 378 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 367 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2461 Ssu-Chr6 57918353 57919489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2461 4 194 C3H Transcription Factor Family AT1G72220 48.879 1.11e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2461 - - gmx:100805705 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2461 6 57918353 57919489 Ssu6g2461 6 57918353 57919489 ECH