Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2446 ATGGAGCGGTATGAGATTCTACAGGATATTGGGTCTGGGAATTTCGCTGTGGCCAAGCTTGTTAGGGACAACTGCACCAATGAGCTTTTTGCTGTCAAGTATATTGAGAGAGGCCAGAAGATTGATGAGCATGTCCAGAGGGAAATCATGAACCATAGATCATTGAAGCACCCCAATATTATTAGATTCAAAGAGGTCCTGCTGACACCAACACATCTAGCCATAGTAATGGAGTATGCTGCTGGAGGAGAACTCTTTCAGAGGATATGCAATGCTGGTAGATTCGGTGAGGATGAGGCAAGATTTTTCTTTCAGCAATTGATATCAGGAGTCAGTTACTGTCATTCAATGCAAATCTGTCATAGAGATCTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCACCGCGAGTCAAAATTTGTGACTTCGGTTACTCAAAGTCATCAGTTTTGCATTCACAACCTAAGTCTACGGTAGGAACTCCTGCTTACATTGCACCTGAGGTTCTTACGAGGAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTGTATGTGATGTTAATTGGGGCTTATCCTTTTGAAGACCCTGCAGATCCAAGAAACTTCAAAAAAACCATTGGTAAGATACTTGGTGTCCAGTACTCAGTCCCAGATTATGTACGAGTTTCCATGGAATGTAGACATCTTCTATCACAAATATTTGTGGCGAGTCCTGAAAAGAGAATAACAATACCAGAGATTAAAAACCATCCATGGTTTTTAAGAAACTTACCCACAGAACTGATGGAAGGTGGAAGCTGGCaaataaatgatgtaaataaTCCGTCACAAGGTGTTGAGGAAGTCCTGTCTATAATACAAGAGGCCAGAAAAACTCTTAACGTTCCCAAGGTTGGTGGCCTTCTTACTGGGGGCATCATGGACCTGGATGACTTGGATTCTGATGAAGATCTTGAAGATGTAGAAACAAGCGGTGAATTTGTGTGTCCTCTTTGA 1017 0.4159 MERYEILQDIGSGNFAVAKLVRDNCTNELFAVKYIERGQKIDEHVQREIMNHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFQRICNAGRFGEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLIGAYPFEDPADPRNFKKTIGKILGVQYSVPDYVRVSMECRHLLSQIFVASPEKRITIPEIKNHPWFLRNLPTELMEGGSWQINDVNNPSQGVEEVLSIIQEARKTLNVPKVGGLLTGGIMDLDDLDSDEDLEDVETSGEFVCPL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2446 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Ssu6g2446 338 SUPERFAMILY Protein kinase-like (PK-like) 1 268 IPR011009 -
Ssu6g2446 338 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu6g2446 338 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2446 338 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2446 338 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2446 338 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Ssu6g2446 338 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 332 - -
Ssu6g2446 338 CDD STKc_SnRK2 3 259 - -
Ssu6g2446 338 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Ssu6g2446 338 PANTHER SERINE/THREONINE KINASE 2 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2446 Ssu-Chr6 57580354 57583655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2446 3 279 CBL-interacting serine-threonine protein kinases AT4G24400 40.909 3.93e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu6g2446 Pkinase 1.2e-70 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2446 6 57580354 57583655 Ssu6g2446 6 57580354 57583655 ECH