Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2441 ATGAAATCCCTTGTGAGCCTCTGCACCGGAGTCATCTACGACTACTCCAACATCCAAAACTGGCTCGACGGCGGCAATAACACCTGCCCCGCAACCATGCAGGTCCTCCAAACCAAAGACTTTATTCCCAACCGCACTCTACAAAGCCTCATCCAGATCTGGTCCGATTCAGTATGCCACCAAACGGTTTCAGAACTGGTCCCGTCCCCGAACCAAGCCCTCTACGCCATTGCTAACTTGCAAATTGACTCCCTCCGATCTAGTTCGCTCGCGAAACTGCTCCATTTTGCCAAAGACTTTCACCAAAACAAACTCTTCCTTACAAAAGCAGAAGGCTTCGTGAACAAATTACTTCGTCTCCTCGACAATGTCGACGCTAGAGAAACCATGAAGAGTATTGAATTTCTCGAACAAGTCGTCATCGTGTTAGGTTTAATTTTGGAAGATGTCGAAGATTGCGAGGGATTGAAAAACTCTatgttgaaagaaaagaaacgaAGCTTGGATACTCTACTTCTCGTTCTGCGACGAGGAGGCTCCGATTCAAAAATTGCCTCCGCTAGTGTTTTATAA 573 0.4538 MKSLVSLCTGVIYDYSNIQNWLDGGNNTCPATMQVLQTKDFIPNRTLQSLIQIWSDSVCHQTVSELVPSPNQALYAIANLQIDSLRSSSLAKLLHFAKDFHQNKLFLTKAEGFVNKLLRLLDNVDARETMKSIEFLEQVVIVLGLILEDVEDCEGLKNSMLKEKKRSLDTLLLVLRRGGSDSKIASASVL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2441 190 Pfam U-box domain 4 55 IPR003613 GO:0004842|GO:0016567
Ssu6g2441 190 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Ssu6g2441 190 SUPERFAMILY RING/U-box 5 56 - -
Ssu6g2441 190 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 1 190 - -
Ssu6g2441 190 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Ssu6g2441 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Ssu6g2441 190 PANTHER WDSAM1 PROTEIN 1 190 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2441 Ssu-Chr6 57472650 57473222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2441 1 190 U-box Gene Family AT5G64660 41.206 1.47e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2441 - - gmx:100801033 244.588