Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2437 ATGAAGCAAAACGAGCTTCAACCGCTGCCTCTACTAAGTAGCTTCCTTGGTTCAGCTCCCCAAGAAGCTTTGCTCCAAAACCAAATTCCTAAGGCGTGCTATGGTCAAGCTGAGGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACAATTCAAGTGGCTCCACCAATAATCATCCTGGCTTTGTGAATGCCACAACTCAAGTTTCTAACAATTACTGGATACCAACTCAAGAGCAGATCCTCAATGGGTTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAATCGCTACAACAACCTTCAGATGCATATGTGGGGACACGGGTCACAGTATCGTAGAGGCCCAGACTCGCTGAAACGAACTCACCCGCGACCCTTGTTAGATATTCCATGCTACTGTTGCTCAAGAGGGTGCAAGAACAACATTGAGCACCCAAGAGCCAAGCCTCTGAAGGATTTTCGAACGCTTCAGACACACTACAAGAGGAAGCACGGGGCCAAGCCCTTCACGTGTCGCAAGTGTGGCAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGTGGCAAACGCTGGCTTTGTATTTGCGGTTCCGACTTCAAACATAAGAGATCGCTTAAGGACCACATCAAAGCCTTTGGATTTGGTCATagccctttttcttcttcatctgaGGGCACGTAA 702 0.4729 MKQNELQPLPLLSSFLGSAPQEALLQNQIPKACYGQAEDVTVALHIGLPDNSSGSTNNHPGFVNATTQVSNNYWIPTQEQILNGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSEGT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2437 233 Gene3D Classic Zinc Finger 87 110 - -
Ssu6g2437 233 Pfam Zinc finger, C2H2 type 88 107 IPR013087 -
Ssu6g2437 233 PANTHER ZINC FINGER PROTEIN WIP2 5 227 IPR043584 GO:0003700|GO:0010468
Ssu6g2437 233 SMART c2h2final6 88 110 IPR013087 -
Ssu6g2437 233 SMART c2h2final6 135 167 IPR013087 -
Ssu6g2437 233 SMART c2h2final6 172 192 IPR013087 -
Ssu6g2437 233 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Ssu6g2437 233 Gene3D Classic Zinc Finger 168 224 - -
Ssu6g2437 233 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 227 - -
Ssu6g2437 233 SUPERFAMILY beta-beta-alpha zinc fingers 83 110 IPR036236 -
Ssu6g2437 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Ssu6g2437 233 SUPERFAMILY beta-beta-alpha zinc fingers 157 192 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2437 Ssu-Chr6 57215174 57217101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2437 6 228 C2H2 Transcription Factor Family AT1G34790 59.426 4.34e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g2437 zf-C2H2 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2437 - - gmx:547675 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2437 6 57215174 57217101 Ssu6g2437 6 57215174 57217101 ECH