Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2436 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTTGTCGGAGGACTAGCTTGGGAGACTCCAACCGAGGAAATGCGCAAATATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGCGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGGCCAAGACCATCACCACCTAGAGGAAGGGGTACATTCCAAGGAGCACCGGGAACGGCGTCGTACAGTGGAGTTCCGGCGGCAGGACCGCCGGCTCTGCCGCCGCCTCCACCGCCGTTAGTGTACCCGCAGTATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACGTTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCATATTACTATGGCTATTCCGTGCAAGCACCAAGAGGCACATTTTCTGCACTTCAACCACATCGCATACCAGCTGGATCCTCTTATCTATATTACCCTACATCCATGGAAGGCTCATTCCCTGCATATCGTCCACCACCTCAATTGCAACACCTAGCAATAAGGCTACCCCCTCCTTCCCCTAGTGATTCACAGACTCAGCAGCGTACCTCCTCCGAGACAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGaactga 813 0.492 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGAPGTASYSGVPAAGPPALPPPPPPLVYPQYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSALQPHRIPAGSSYLYYPTSMEGSFPAYRPPPQLQHLAIRLPPPSPSDSQTQQRTSSETAGGVVITSESSNTQGRN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2436 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Ssu6g2436 270 Gene3D - 3 110 IPR012677 -
Ssu6g2436 270 PANTHER GEO13361P1-RELATED 1 261 - -
Ssu6g2436 270 SMART rrm1_1 17 89 IPR000504 GO:0003723
Ssu6g2436 270 MobiDBLite consensus disorder prediction 221 270 - -
Ssu6g2436 270 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Ssu6g2436 270 MobiDBLite consensus disorder prediction 238 270 - -
Ssu6g2436 270 MobiDBLite consensus disorder prediction 92 131 - -
Ssu6g2436 270 CDD RRM_RBM24_RBM38_like 16 91 - -
Ssu6g2436 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Ssu6g2436 270 PANTHER - 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2436 Ssu-Chr6 57199905 57204794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2436 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.48e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2436 K25006 - gmx:100787086 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2436 6 57199905 57204794 Ssu6g2436 6 57199905 57204794 ECH
Ssu6g2436 6 57199905 57204794 Ssu1g3108 1 81437974 81442073 PCT