Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2430 ATGATGGCTGATTCACTGTCCGTTAATATTGATTCTTCACTTAAGTCTGAACTATCCATTGAAAAAACTACCCACGAGGCTCAACACTCTCCATCTAACATCCAAAAGGCTATTGCTGAGCTCTTTGGTACATACATTCTTATATTTGCAGGATGTGGAGCCGCTCTTGTAAACGAGAAGTTGCCACTTACAATAGTAGGCATAGCAATTGTTTCGGGTCTAGCTCTCACGGTGGCTACATATTCTGTTGGTCATGTCTCTGGTGGCCATTTCAATCCAGCAGTCACAATTGCTTTGGCAGTTGTCAGAAAAGTTCAATTGAAACTTGTGCCTATTTATGTGTTGTCCCAGATGATGGGTGCTACACTGGCCCCTCTCACCCTCAAAGTGTTGTATCATGACAAGGTGGATATTGGAATCACAGTGACTAAATACTTGAGCTCAACTTCTGATGTCGAAGCAAAAGTGTGGGAATTCATAACCACTTCCATACTGATGCTCACCATTTGTGGTGTTGCCACTGATCACAGAGGGAGCAAAGATCTCACTGGAGTTGCGATAGGCATTTCCGTTCTGATTAACGTCATCATTGCCGGGCCTATTACTGGAGCTTCCATGAATCCAGTTATGGCTAAAGCAAAACAGTTGAGAAAGTTAATTGTTCAATCATTTGCATATATACTCAACCATGGGAAATTTCAGGAATAA 708 0.4209 MMADSLSVNIDSSLKSELSIEKTTHEAQHSPSNIQKAIAELFGTYILIFAGCGAALVNEKLPLTIVGIAIVSGLALTVATYSVGHVSGGHFNPAVTIALAVVRKVQLKLVPIYVLSQMMGATLAPLTLKVLYHDKVDIGITVTKYLSSTSDVEAKVWEFITTSILMLTICGVATDHRGSKDLTGVAIGISVLINVIIAGPITGASMNPVMAKAKQLRKLIVQSFAYILNHGKFQE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2430 235 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Ssu6g2430 235 PANTHER AQUAPORIN NIP2-1 11 209 IPR034294 -
Ssu6g2430 235 Pfam Major intrinsic protein 30 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2430 235 SUPERFAMILY Aquaporin-like 28 214 IPR023271 -
Ssu6g2430 235 PANTHER MAJOR INTRINSIC PROTEIN 11 209 - -
Ssu6g2430 235 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2430 235 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2430 235 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2430 235 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2430 235 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu6g2430 235 Gene3D Glycerol uptake facilitator protein. 5 226 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2430 Ssu-Chr6 57028819 57030622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2430 30 231 Major Intrinsic Protein MIP AT5G37820 42.396 2.92e-47 157