Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2418 ATGACGAACAAGAATGTGGTGGCTCCTATTGGGAAATCATCACGTGTTAATAACACGCTTGTGGAGTTGGCAATGTCGATTTCAAACTCAAGTGCTCTACCTAGAGCCGCAGTGCCCGAAATAATGGCCTTGCTAGGTGGGGTTTTAGGCATACCCCCGAAAAAGCGCCAAATGAAAACGTTGGAGGATGGAAAAGGAGGAACCAAAGTTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACTCGAGTCAAATCCACACAAAACCAAGACCCAAGTCCTTGGACTCTTTACCATCCTTCGGCACTGAACATGTTTGATCAGATTATATGTGAGTCCAAAGGGAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAaagcatatatgagtaaaaagATGAGGGCCACATTAAAAGACATAGCAAGGCATTTCCCCACCGCAATCGTGAGTGGAAGGTGCATAGACaaggtgtATGACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGGATGGACATCAAGGGACCAACAAATAGGCGAAGTACtaagaaaGGAAATGAAGAAGTACTCTTCCAACCCGCGAGTGAATTTCTGCCCGTGATCAATGAGGTGTACAAAATCTTGGTGGAAAAAACGAAGTCTGTCCCGGGGGCTAAGGTGGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCGTCATTGGCTGAACAAGTTAGCTTGGTGCTCAATGAGTACCCAAAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATACGACCTACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTAGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGAtgcttttaagGTTTTGCGGAGTAGGGGCCAAGGGGCTGggattcttgtttctaaaattcCAAAAGAAACCGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGCGACATTTGGTGGAGTGGAAAAGAACGGGTTCCCAATACCACAAGTTGTAG 1134 0.4286 MTNKNVVAPIGKSSRVNNTLVELAMSISNSSALPRAAVPEIMALLGGVLGIPPKKRQMKTLEDGKGGTKVNTWIDSMRASSPTRVKSTQNQDPSPWTLYHPSALNMFDQIICESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRATLKDIARHFPTAIVSGRCIDKVYDFVRLAELYYAGSHGMDIKGPTNRRSTKKGNEEVLFQPASEFLPVINEVYKILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWASLAEQVSLVLNEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRSRGQGAGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTGSQYHKL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2418 377 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 4 377 IPR044651 GO:0004805|GO:0005992
Ssu6g2418 377 Pfam Trehalose-phosphatase 122 354 IPR003337 GO:0003824|GO:0005992
Ssu6g2418 377 Gene3D - 225 376 IPR023214 -
Ssu6g2418 377 Gene3D - 119 203 IPR023214 -
Ssu6g2418 377 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 4 377 - -
Ssu6g2418 377 SUPERFAMILY HAD-like 122 367 IPR036412 -
Ssu6g2418 377 TIGRFAM T6PP: trehalose-phosphatase 117 365 IPR003337 GO:0003824|GO:0005992
Ssu6g2418 377 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 122 329 IPR006379 -
Ssu6g2418 377 CDD HAD_TPP 122 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2418 Ssu-Chr6 56604051 56606252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2418 115 364 Trehalose Biosynthesis Gene Families AT1G70290 27.341 4.25e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2418 K01087 - gmx:100792915 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2418 6 56604051 56606252 Ssu6g2418 6 56604051 56606252 ECH
Ssu6g2418 6 56604051 56606252 Ssu1g3088 1 80742566 80744727 PCT