Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2416 ATGGCAGCTACGATGGATTTCTACAACGGACCACAGCTTCAGTCAGATCCATTCAGAGATTACCCAGATCCAGGCCCAGATCGAGTGCCAGAGCAGGAGCTCCCTCTCTCTGAGCTTCCTGGGCCCGAAGCCCGTCCCCATGAAGCAAGCGGGCGTGCCTCCGAAGCCCACGAAGCTCTACCGCGGGGTGAGGCAGAGGCATTGGGGGAAGTGGGTGGCCGAGATCAGACTCCGAAGAACCGCACGAGACTCTGGCTCGGAACCTTCGACACTGCCGAGGAGGCTGCTTTGGCTTACGACAAAGCAGCGTACAGGCTCCGAGGCGACTTCGCGAGACTCAACTTCCCGAATCTGAGAGGCTCGTGCATCGGCGAGTACAAGCCCCTGCAGTCCGCGGTTGACGCGAAGCTCGACGCTATTTGTGAAAGCTTGGCCGAAAGTGCAGAAGCAAGGGAAGGCGGAGAAGGGTGCGAGGAGGCTCCGAACCCGAACCCGAACCCGAACCTTTCTTTCAAACCCGAGCCTTCGGCTTCGCTGTCTCCTGTGATGACCGAGAGCGAGTGTTCCGCGGGTGGTTCTCCACTGTCCGATCTTACCTTTGATGTTACCGAGCCGCAATGGGAAGATGCTTCGGCGCATTTTAACCTGCAGAAGTTCCCTTCTTATGAGATTGACTGGGATTCTCTGTGA 690 0.5797 MAATMDFYNGPQLQSDPFRDYPDPGPDRVPEQELPLSELPGPEARPHEASGRASEAHEALPRGEAEALGEVGGRDQTPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLRGSCIGEYKPLQSAVDAKLDAICESLAESAEAREGGEGCEEAPNPNPNPNLSFKPEPSASLSPVMTESECSAGGSPLSDLTFDVTEPQWEDASAHFNLQKFPSYEIDWDSL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2416 229 MobiDBLite consensus disorder prediction 48 64 - -
Ssu6g2416 229 MobiDBLite consensus disorder prediction 151 202 - -
Ssu6g2416 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 78 228 - -
Ssu6g2416 229 SMART rav1_2 61 122 IPR001471 GO:0003700|GO:0006355
Ssu6g2416 229 Gene3D AP2/ERF domain 53 117 IPR036955 GO:0003700|GO:0006355
Ssu6g2416 229 MobiDBLite consensus disorder prediction 1 80 - -
Ssu6g2416 229 MobiDBLite consensus disorder prediction 171 193 - -
Ssu6g2416 229 CDD AP2 78 118 IPR001471 GO:0003700|GO:0006355
Ssu6g2416 229 ProSiteProfiles AP2/ERF domain profile. 38 116 IPR001471 GO:0003700|GO:0006355
Ssu6g2416 229 SUPERFAMILY DNA-binding domain 79 117 IPR016177 GO:0003677
Ssu6g2416 229 Pfam AP2 domain 79 108 IPR001471 GO:0003700|GO:0006355
Ssu6g2416 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 78 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2416 Ssu-Chr6 56531673 56532688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2416 76 229 AP2-EREBP Transcription Factor Family AT1G78080 57.738 1.64e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g2416 AP2 5.2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2416 K09286 - gmx:100802961 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2416 6 56531673 56532688 Ssu6g2416 6 56531673 56532688 ECH
Ssu6g2416 6 56531673 56532688 Ssu1g3086 1 80703741 80704802 PCT