Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2407 ATGAGAGAACAAGGGGTCCTTCATCTTGAGGATAGTGGTCAGACAGAGAGGTCCCAGTGGGTGCTTGATTCTCCCAACCCACCCCCTCTGTGGAAGAAGCTGTTTAGTTCTGTCAAGGAAACCATTCTGCCTCATGGGAACAAGTTCTGCTTTTCTTCCAAGAAGAAAACTTCCCATGGACGTGCAGTCTCATGCTTGCGGAATTTGTTCCCAATCATTAGTTGGTTAAGAGATTACAAAGCCTCCAAGCTCAAAGATGACCTCTTAGCTGGCTTAACTCTTGCCAGCCTCTGCATACCTCAGAGCATAGGATATGCTAATTTAGCAAAAGTTGATCCTGAATATGGCCTGTATACCAGCGTTGTTCCTCCTCTTATTTATGCTCTGATGGGAAGCTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTGTCAATGCTGTTATCCTCTCTGGTCCCAAAGGTGGAAGATCCGGTTGCCAATCCTCACGCCTATAGAAATCTTGTCTTCACTGTGACATTCTTCACTGGAATTTTTCAAACTGCATTTGGTGTTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCCTTAGTTGGATTCATGGCAGGCGCTGCCATCGTTATTGGTCTTCAGCAGCTCAAAGGGTTGCTGGGGATCAGTCACTTTACCTCCAAAACAGATGCAGTATCAGTGTTGGGATCTGTTTACAAGTCACTACATCATCAAATTGCCTCTGGAGAAAAATGGAACCCTCTGAATTTTGTCCTGGGGTGTTCATTCTTGATTTTCATTCTAATTACCCGTTTTATTGGCAGAAAAAACAGAAAGCTTTTCTGGTTGCCTGCTATTTCTCCTCTTCTATCAGTTATACTATCGACTTTGATTGTGTATTTGTCAAGAGCTGATAAGCATGGGGTTAATATAATAAAGCATGTCAAAGGAGGCCTGAATCCAAGTTCACTTCACCAGTTGCAATTCCATGGTCCACATGTTGGACAAGCAGCcaaaattggtttgatttgttCTGTTATTGCGCTGACTGAAGCAATAGCGGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGGAATAAAGAAATGTTATCAATGGGAATCATGAACATTGCAGGATCTTTAACTTCATGCTATGTGGCGACTGGTTCCTTCTCAAGGACTGCAGTGAATTTTAGTGCTGGATGTCAAACAGCAGTGTCAAATATAGTGATGGCCGTAACTGTGCTTTTGTCCCTGGAACTGTTTACAAGGCTCTTATACTACACTCCTGTGGCCATCCTTGCTTCTATCATCCTCTCTGCTCTTCCTGGATTAATTGACATTAGTGAGGCTTGCTACATCTGGAAGGTTGACAAATTGGACTTTCTTGCCTGTGTTGGTGCTTTTCTTGGTGTCTTGTTTGCATCAGTAGAGATTGGTCTTCTTGTTGCAGTGATAATCTCGTTTGCAAAGATACTAATACAATCAATTCGACCTGGAATAGAAGTTCTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTTACTCAATATCCCATGGCCATAAGCACACCAGGCATCATAGTGATTCGCATAAGTTCTGGCTCACTCTGCTTTGCAAATGCTAATTTTGTCAGAGAAAGAATACTCAAGTGGGTCACGCAAGATGAAGATGACCTTAAAGACTCTACCAAGGGTCGGGTCCGAGCCGTAATTCTGGACATGACAAACCTGATGAATGTTGATACTTCCGGAATTCTAGCACTTGAGGAACTGCACAAGAGGTTGCTTTCCCGCGGTGTAGAATTAGCTATGGTCAACCCGAGGTGGCTAGTAATTCACAAGCTTAAGCTTGCACACTTTGTGGACACAATTGGAAAAGAATGGGTTTTCCTTACTGTTGGAGAAGCGGTAGACGCATGTCACTCTTCCAAAATTGCCAGAGCTTGA 1965 0.4295 MREQGVLHLEDSGQTERSQWVLDSPNPPPLWKKLFSSVKETILPHGNKFCFSSKKKTSHGRAVSCLRNLFPIISWLRDYKASKLKDDLLAGLTLASLCIPQSIGYANLAKVDPEYGLYTSVVPPLIYALMGSSREIAIGPVAVVSMLLSSLVPKVEDPVANPHAYRNLVFTVTFFTGIFQTAFGVFRLGFLVDFLSHAALVGFMAGAAIVIGLQQLKGLLGISHFTSKTDAVSVLGSVYKSLHHQIASGEKWNPLNFVLGCSFLIFILITRFIGRKNRKLFWLPAISPLLSVILSTLIVYLSRADKHGVNIIKHVKGGLNPSSLHQLQFHGPHVGQAAKIGLICSVIALTEAIAVGRSFASIKGYHLDGNKEMLSMGIMNIAGSLTSCYVATGSFSRTAVNFSAGCQTAVSNIVMAVTVLLSLELFTRLLYYTPVAILASIILSALPGLIDISEACYIWKVDKLDFLACVGAFLGVLFASVEIGLLVAVIISFAKILIQSIRPGIEVLGRVPRTEAFCDVTQYPMAISTPGIIVIRISSGSLCFANANFVRERILKWVTQDEDDLKDSTKGRVRAVILDMTNLMNVDTSGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVDTIGKEWVFLTVGEAVDACHSSKIARA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2407 654 PANTHER SULFATE TRANSPORTER 10 652 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu6g2407 654 Pfam STAS domain 523 642 IPR002645 -
Ssu6g2407 654 ProSiteProfiles STAS domain profile. 539 646 IPR002645 -
Ssu6g2407 654 PANTHER SLC26A/SULP TRANSPORTER-RELATED 10 652 - -
Ssu6g2407 654 Gene3D STAS domain 502 649 IPR036513 -
Ssu6g2407 654 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
Ssu6g2407 654 SUPERFAMILY SpoIIaa-like 529 647 IPR036513 -
Ssu6g2407 654 CDD STAS_SulP_like_sulfate_transporter 523 639 - -
Ssu6g2407 654 Pfam Sulfate permease family 84 470 IPR011547 GO:0016021
Ssu6g2407 654 TIGRFAM sulP: sulfate permease 71 642 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2407 Ssu-Chr6 56057135 56061945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2407 14 651 Inorganic Solute Cotransporters AT5G10180 64.531 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2407 K17469 - gmx:100776591 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2407 6 56057135 56061945 Ssu6g2407 6 56057135 56061945 ECH
Ssu6g2407 6 56057135 56061945 Ssu1g3074 1 80331808 80336033 PCT