Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2405 ATGGGTCGTGTTAAACTTGAGATAAAGAGAATAGAGAACCCCACGAATCGACAAGTCACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCGTACGAGCTATCAATCCTGTGTGACATTGATATTGCCGTTATAATGTTTTCTCCATCAGGACGTGTCAACCACTTTTCCGGTAGGAGGAGGATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGACCAAGAAAGAGACAACGCTGTTAGTTTTCCCGAGCTACCCTACCGCAGGTGTACCCTCGAGAATTCTCTATTCTCTGCGACCCTTCAGCAACTGAGAAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTCCAACAAGAAGTTAATAGGTTACAGCAGCAACTTCAAATGGCCGAGGAGCAGATAAGATTATATGAACCCGACCCATTAAAGATGACATCTATGGCGGATCTTGAAACCAGCGAAAAGCAACTTGTAGACGTCTTGACACGTGTCATACAGAGAAAGGAATATTTGTTGAGCAACCATCTATCTTCGTACGATCCATCTGGTATTCAGGGGATACCGGCCTCTTTCGAGAATGTTGGTTGGTTGCAGGATGGGAGTCAGAACCATGCCCAGATTTTTGATGCATCTGCACCTTTAGATCCTCTCAGGGACTTGTCTTCCACCGTGTATGGTTCATTTTCCCAAGGGACAAGTTCAAATGCTGATCCACGAGGCATGGGGGAGTGCCACGTGTCAAATCCAAGCGATGGGAACCTCCAAGCATGGCCTCAAGGGTACACATTGTATCCTCACATTCAGCATGACATGGTGGGACCTGACATGCCAGACATGATGCCACATGGGCAGGTGAACATCCCAATCACTGCCTCACACGTGGAACCACCCAAGAATGAGCCTGTAGAATATGACCAGTCTAAACAACCCCATCATCATCAGCTTAATGCTCAATGA 996 0.4618 MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRCTLENSLFSATLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMTSMADLETSEKQLVDVLTRVIQRKEYLLSNHLSSYDPSGIQGIPASFENVGWLQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRGMGECHVSNPSDGNLQAWPQGYTLYPHIQHDMVGPDMPDMMPHGQVNIPITASHVEPPKNEPVEYDQSKQPHHHQLNAQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2405 331 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ssu6g2405 331 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Ssu6g2405 331 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Ssu6g2405 331 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu6g2405 331 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu6g2405 331 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu6g2405 331 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 276 - -
Ssu6g2405 331 Coils Coil 119 153 - -
Ssu6g2405 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu6g2405 331 MobiDBLite consensus disorder prediction 304 331 - -
Ssu6g2405 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 276 - -
Ssu6g2405 331 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu6g2405 331 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu6g2405 331 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2405 Ssu-Chr6 55998653 56003016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2405 1 304 Type I MADS-box Gene Family AT1G22130 56.688 2.33e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu6g2405 SRF-TF 5.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2405 - - gmx:100305913 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2405 6 55998653 56003016 Ssu6g2405 6 55998653 56003016 ECH