Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2404 ATGAAGGTCACAAGAATTGTTTCAATCTTCGTGATCTCGATACTTTGTTTTCAAGAACTCGTCCACGTTTTTTCGTCACCTTTCTTATACGCAAACCAGGTCTATGAGAAATCGTCTGGTGGAAGaaatcTTAAACAGGAACAAGAACATGCTCAAGAAGTGCGTTGCTCCAGGGAGAGAAGTAGGGCAGCTCAGAAAGTGATAGAGGAGTATTTGACACCATTTGTGGAACGAGAAAACTACCAGCTTTCGAGTAAGTGCAGACTTCACCCTGAAAATGATATATTCAGGGATCAGGAAGagcataaaatttatatagataGACATGAATGGCGGTGTGGATATTGTAAGAAAAGCTTTCGGGAAGAAAAATTTCTCGATCAGCACTTTGATAACAGACACTACAATCTTCTGAATCTAAGTCATGGTAAGTGCTTGGCTGATTTATGTGGGGCGTTGCATTGTGATGCTGTGATGAATTTCAAATCCTCTAGAAGCAAATGTAATCCGGCAGCTGCTGCAAGAAACCGTCACCTATGTGAGAGTCTTGCTGACAATTGTTTTCCTATAAGTGAGGGTCCATCAGCAGGCCGCCTTCATGAATTGTTTCTGCACCAATTTTGTGATGCTCACACCTGCTCAGGGAAACATAAACCCTTCTCCAGAGGAGGCAAGGATCAAAGTAGTTTCTTACGCTTGGCTGCTGGAGCATTGATCTTGGTGCTGCTTCCTGtgttctatctttttctttatttggtaCAAAGGtaccatttttatatttttaaatgtgatttaaCCAATAAAGGTTTTACACCAATATTTCATAATGCTATTTCGCAAGTTGTAGTGATATGA 855 0.3848 MKVTRIVSIFVISILCFQELVHVFSSPFLYANQVYEKSSGGRNLKQEQEHAQEVRCSRERSRAAQKVIEEYLTPFVERENYQLSSKCRLHPENDIFRDQEEHKIYIDRHEWRCGYCKKSFREEKFLDQHFDNRHYNLLNLSHGKCLADLCGALHCDAVMNFKSSRSKCNPAAAARNRHLCESLADNCFPISEGPSAGRLHELFLHQFCDAHTCSGKHKPFSRGGKDQSSFLRLAAGALILVLLPVFYLFLYLVQRYHFYIFKCDLTNKGFTPIFHNAISQVVVI 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2404 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 134 IPR013087 -
Ssu6g2404 284 PANTHER ZINC FINGER PROTEIN-RELATED 10 255 - -
Ssu6g2404 284 ProSitePatterns Zinc finger C2H2 type domain signature. 113 134 IPR013087 -
Ssu6g2404 284 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2404 Ssu-Chr6 55973951 55977213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2404 31 255 C2H2 Transcription Factor Family AT5G63280 61.674 8.36e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g2404 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2404 - - gmx:100780668 473.011