Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2391 ATGAACTCTTCATCAACTCAACTAGTCCTCACGAAAAGCATGGGTATATATGATCCATTCCATCAAGTGAACATGTGGGGGGACAGCTTTAAAATTGATGGCAGCCTGAATTCAATTGCTCCCCCAATGTTAATGATGAAGTCTAGCATGCAGAACAAGTCTGAATGTACTCCTCAAGAATCAAGGGAAAATTCTGGAGATGATCAAGAGACTAATGACAAAGCAAATAGTAAGGCGCTAAGACGTCTAGCTCAAAATCGTGAGGCTGCTCGGAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAACTAGAAACAAGTCGTGTGAAGCTCATGCAATTGGAGCTGGAGATTGAGAAAGCAAGAAAGCAGGGTTTATACACACGCAGTGCACTAGAGGTCAGTTATATGGGATCATCTGGAACAATAAACCCAGGGATAACTATGTTTGAACTTGAATATGCACATTGGGTTGAAGAGCAAGATAGACAGAATGAAGAATTGAGAAATGCATTACGAACTCATGCATCTGATATGCAGCTTCACCTACTTGTTGAGAGTTGCTTGAGGCACTACTCAAATCTTTTCAGGATGAAAGCAGATGCAGCAAAGGCCGATGTCTTTTATTTAATCTCTGGTGCATGGAAAGCATCAGTGGAACGCCTTTATCTTTGGATTGGAGGATCCCGGCCATCACAGCTTCTAGATATCATCGTACCACAGCTTGAGCCTTTCACTGATCAACAAACTGTCAGCATTAACAACCTCCGGCTTTCATCTCAGCAAGCTGAAGAAGCTCTTTCTCTAGGATTGGACAAACTCCAGCAGAGTATGGTCCACAACATACCATCAGATCCCCTGGTTGTAGGACACTATGGGTTTGAGATGGCTGCTGCCATGGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCGACAAACTCTGCTGCACGTGTCTCGGATCCTGACAACTGGCCAAGCTGCTCAAGGCTTGCTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCTTTATGGACTGCTCGTTCATGTGATCCTTCCTTTCCCACTCAACACTCAAACTGA 1110 0.4441 MNSSSTQLVLTKSMGIYDPFHQVNMWGDSFKIDGSLNSIAPPMLMMKSSMQNKSECTPQESRENSGDDQETNDKANSKALRRLAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKARKQGLYTRSALEVSYMGSSGTINPGITMFELEYAHWVEEQDRQNEELRNALRTHASDMQLHLLVESCLRHYSNLFRMKADAAKADVFYLISGAWKASVERLYLWIGGSRPSQLLDIIVPQLEPFTDQQTVSINNLRLSSQQAEEALSLGLDKLQQSMVHNIPSDPLVVGHYGFEMAAAMDKGEALEGFVNQADHLRRQTLLHVSRILTTGQAAQGLLAMGEYFHRLRTLSSLWTARSCDPSFPTQHSN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2391 369 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 361 - -
Ssu6g2391 369 Coils Coil 97 124 - -
Ssu6g2391 369 Gene3D - 77 130 - -
Ssu6g2391 369 Coils Coil 158 178 - -
Ssu6g2391 369 Pfam Seed dormancy control 166 239 IPR025422 GO:0006351|GO:0043565
Ssu6g2391 369 MobiDBLite consensus disorder prediction 60 74 - -
Ssu6g2391 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Ssu6g2391 369 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Ssu6g2391 369 PANTHER TRANSCRIPTION FACTOR TGA9 14 361 - -
Ssu6g2391 369 SUPERFAMILY Leucine zipper domain 78 112 IPR046347 GO:0003700|GO:0006355
Ssu6g2391 369 MobiDBLite consensus disorder prediction 50 74 - -
Ssu6g2391 369 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Ssu6g2391 369 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2391 Ssu-Chr6 55596236 55600268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2391 2 362 Calmodulin-binding Proteins AT1G77920 53.298 2.59e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu6g2391 DOG1 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2391 K14431 - gmx:100775882 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2391 6 55596236 55600268 Ssu6g2391 6 55596236 55600268 ECH
Ssu6g2391 6 55596236 55600268 Ssu1g3063 1 80053056 80056716 PCT