Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2383 ATGATCGAAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGACTGCAAATGGATCTGTTAAGCTCGCAGATTTTGGATTGGCAAAGGCAATCAAGTTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCTCCAGAGGTTGTAAAAGGGAAACATACAGGTTATGGGCTTCCAGCTGATATATGGAGTTTGGGATGCACTGTGTTAGAGATGTTAACGGGCCAAATTCCATACTCTCACTTAGAATGTATGCAGGCATTGTTTAGAATTGGAAGAGGTGAGCCACCTCCTGTGCCTGATTCTCTTTCAAGAGATGCACGGGATTTTATCATGCAGTGTCTCAAAGTTAATCCAGATGAACGTCCCAGTGCTGCTCAACTCTTAAACCATTCCTTTGTCCAAAGGCCACTTTCCCAGTCCTCTGGGTCTGCATCTCCGTATATTCTAAGGGGTTAA 474 0.4262 MIEILFTGILNVQIYWWTANGSVKLADFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKHTGYGLPADIWSLGCTVLEMLTGQIPYSHLECMQALFRIGRGEPPPVPDSLSRDARDFIMQCLKVNPDERPSAAQLLNHSFVQRPLSQSSGSASPYILRG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2383 157 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2383 157 Pfam Protein kinase domain 20 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2383 157 SUPERFAMILY Protein kinase-like (PK-like) 18 142 IPR011009 -
Ssu6g2383 157 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 19 152 - -
Ssu6g2383 157 Gene3D Transferase(Phosphotransferase) domain 1 4 151 - -
Ssu6g2383 157 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 19 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2383 Ssu-Chr6 55070711 55102316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2383 19 143 MAP Kinase Kinase Kinase AT4G08500 76.190 1.57e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu6g2383 Pkinase 3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2383 K13414 - gmx:100819177 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2383 6 55070711 55102316 Ssu1g3047 1 79772016 79778818 PCT