Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2380 ATGGCGGCTTCCGTCGACAACCGTCAATACGGCGCCCACATAAACGGCGTCGTCCGCGGTTGCGGCCAGGACCTCAAGCCTCCTCTGCCGCTGGACTTCGACTTGGACTCCTCCAGCAGCGACGAAGACGAAAACGACGACGCTTCGTACCTGAAAGACCTAATACGCAAGGCGAATGCGGAAATCGAGGCGTCCGTGCTGGACCCGCGCGACGAGGCAACCGCGGACCAGTGGGTCGCACGGAACGCCTCCATGGTCCGCCTCACAGGGAAGCACCCCTTCAACTCGGAGCCCCCGCTCCCGCGCCTCATGCACCACGGCTTCATCACCCCGGTCCCGCTCCACTACGTGCGCAACCACGGCCCGGTCCCCAGGGCCCGCTGGGAGGACTGGGCCGTGGAAGTGACCGGCCTGGTGAAGCGGCCCGCCCGGTTCACCGTGGACCGGCTCGTGCACGAGTTCCCGAGCCGCGAGTTCCCCGCAACGCTCGTGTGCGCCGGGAACCGCCGCAAGGAGCAGAACATGGTGAGGCAGAGCGTGGGCTTCAACTGGGGCGCCGCCGGCGTGTCCACCTCCGTGTGGCGCGGCGTGCCGCTGCGGCGCGTGCTGCGCCGCTGCGGGATCCTCGCTCGTGCGAAGGGCGCGCTGCACGTGTGCTTCGAGGGCGCCGAGGATCTCCCCGGGGGCGGTGGGTCCAAGTATGGAACTAGCGTGAGGAGGGAGGTGGCCATGGACCCTTCGCGTGACATCATCATCGCGTACATGCAAAACGGCGAGCCGTTGGCGCCGGATCATGGGTTCCCCGTTCGCATGATCATTCCCGGGTTCATTGGCGGGCGAATGGTGAAGTGGCTCAAGCGCATTGTCGTCACTGAGCACGAGTGCGACAACCATTACCATTATAAGGACAATAGAGTACTTCCTTCCCACGTTGATGCAGAACTTGCCAGCGAAGAAgGTTGGTGGTACAAGCCGGAGTATATCATCAACGAGTTGAATATAAACTCAGTGATAACGACTCCTTGTCACGAGGAGATATTGCCCATCAACTCATGGACTACGCAGAGGCCTTACGTACTGAGAGGCTACGCATATTCCGGTGGTGGAAGGAAAGTGACACGTGTTGAGGTAACACTGGACGGTGGAGAAACGTGGCACGTGTGCACAATTGACCGTCCTGAGAAACCCAACAAATACGGGAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGCTGGACCTGCTTGGGACCAAGGAGATTGCGGTTCGCGCTTGGGATGAGGGCCTCAACACCCAGCCTGAAAACCTCATTTGGAATGTTATGGGCATGATGAACAACTGCTGGTTCAGAGTGAAAACAAATGTGTGCAAGCCCCACAAGGGCGAGATTGGCATAGTGTTTGAACACCCAACCCAACCAGGCAACCAACCCGGTGGCTGGATGGCAAAGGAAAGACACTTGGAGAAATCACAAGAGCCAAAACAAACCCTCAAAAAGAGTGTGTCCACGCCATTCATGAACAACGCCTCAAACACGTTCTCCGTGTCCGAAGTCAGAAAGCACTGCAATGCTGACTCCGCTTGGATCATCGTCCACGGCCACGTCTACGACTGCACCCGCTTCCTCAAAGACCACCCCGGCGGCACCGATAGCGTCCTCATCAACGCCGGCACCGACTGCACCGAAGAGTTCGACGCCATCCATTCCgacaaagcaaagaaaatgCTCGAAGATTACCGAATCGGCGAGCTCATCACCACAGGCTACACCTCGGACTCATCATCGCCCAACAATTCCGTGCATGGCAATTCTGAAATGACCCATTTGGCCCCTATCAAGGAAATAACCACAACACCACCCCTCAGCGTGGCTCTAAACCCGCGCGAGAAAATCCCATGCAAGCTCGTGTCCAAGACCTCCATTTCCCACGACGTGAGGCTCTTCCGCTTCGCGTTGCCCTCGGAGGACCAACTCTTGGGTTTGCCCGTGGGGAAGCACATTTTCCTGTGCGCCACGATCGACGACAAGCTATGCATGCGCGCCTACACTCCCACGAGCGGCGTGGACGAGGTGGGCTTCTTCGACCTCCTCGTCAAGGTGTACTTCAAAGGCGTGCACCCCAAGTTCCCCAACGGGGGCCTCATGTCGCAGCACCTGGACTCGCTCCCCATTGGGTCCCCGTTGGACGTGAAGGGCCCACTGGGCCACATAGAGTACACCGGGAGAGGCAACTTCCTGGTTCACGGGAAACCGCGATTCGCGAAGAGGCTGGCCATGCTGGCCGGTGGGACCGGGATCACGCCCGTTTACCAAGTGGCGCAAGCGATTCTGAAGGACCCCGAGGACCGCACCGAGATGCACGTGGTGTACGCGAACCGCACGGAGGACGATGTTTTGTTGAGGGAGGAGTTGGACGCGTGGGCGAAGAAGCATGGTGACCGGTTCAAGGTGTGGTACGTAGTGGGAAGCGCGAAGGAAGGGTGGCGGTACAGTGTGGGGTTCGTCACGGAGAGTATCATGAGGGAGCACCTTCCGGAAGCGTCGAGGGATGCCTTGGCTTTGACTTGTGGGCCACCACCCATGATCCAGTTTGCGGTGCAGCCCAATTTGGCGAAGATGGGGTACGATATCAAGAACGATTTGCTCGTCTTTTAG 2664 0.5878 MAASVDNRQYGAHINGVVRGCGQDLKPPLPLDFDLDSSSSDEDENDDASYLKDLIRKANAEIEASVLDPRDEATADQWVARNASMVRLTGKHPFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPRARWEDWAVEVTGLVKRPARFTVDRLVHEFPSREFPATLVCAGNRRKEQNMVRQSVGFNWGAAGVSTSVWRGVPLRRVLRRCGILARAKGALHVCFEGAEDLPGGGGSKYGTSVRREVAMDPSRDIIIAYMQNGEPLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTEHECDNHYHYKDNRVLPSHVDAELASEEGWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYVLRGYAYSGGGRKVTRVEVTLDGGETWHVCTIDRPEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENLIWNVMGMMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNQPGGWMAKERHLEKSQEPKQTLKKSVSTPFMNNASNTFSVSEVRKHCNADSAWIIVHGHVYDCTRFLKDHPGGTDSVLINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSDSSSPNNSVHGNSEMTHLAPIKEITTTPPLSVALNPREKIPCKLVSKTSISHDVRLFRFALPSEDQLLGLPVGKHIFLCATIDDKLCMRAYTPTSGVDEVGFFDLLVKVYFKGVHPKFPNGGLMSQHLDSLPIGSPLDVKGPLGHIEYTGRGNFLVHGKPRFAKRLAMLAGGTGITPVYQVAQAILKDPEDRTEMHVVYANRTEDDVLLREELDAWAKKHGDRFKVWYVVGSAKEGWRYSVGFVTESIMREHLPEASRDALALTCGPPPMIQFAVQPNLAKMGYDIKNDLLVF 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2380 887 PANTHER NITRATE REDUCTASE 46 887 - -
Ssu6g2380 887 SUPERFAMILY Riboflavin synthase domain-like 626 743 IPR017938 -
Ssu6g2380 887 CDD cyt_b5_reduct_like 636 887 - -
Ssu6g2380 887 Pfam Cytochrome b5-like Heme/Steroid binding domain 518 587 IPR001199 -
Ssu6g2380 887 Gene3D - 331 507 - -
Ssu6g2380 887 Gene3D Translation factors 624 737 - -
Ssu6g2380 887 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 137 172 IPR022407 GO:0043546
Ssu6g2380 887 PRINTS Cytochrome B5 signature 575 587 IPR001199 -
Ssu6g2380 887 PRINTS Cytochrome B5 signature 548 562 IPR001199 -
Ssu6g2380 887 PRINTS Cytochrome B5 signature 563 570 IPR001199 -
Ssu6g2380 887 PRINTS Cytochrome B5 signature 538 548 IPR001199 -
Ssu6g2380 887 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 544 551 IPR018506 GO:0020037
Ssu6g2380 887 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 513 588 IPR001199 -
Ssu6g2380 887 SUPERFAMILY E set domains 331 458 IPR014756 -
Ssu6g2380 887 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 731 881 IPR039261 -
Ssu6g2380 887 CDD eukary_NR_Moco 71 456 - -
Ssu6g2380 887 PRINTS Cytochrome B5 reductase signature 728 742 - -
Ssu6g2380 887 PRINTS Cytochrome B5 reductase signature 799 810 - -
Ssu6g2380 887 PRINTS Cytochrome B5 reductase signature 662 673 - -
Ssu6g2380 887 PRINTS Cytochrome B5 reductase signature 683 690 - -
Ssu6g2380 887 PRINTS Cytochrome B5 reductase signature 761 780 - -
Ssu6g2380 887 PRINTS Cytochrome B5 reductase signature 855 863 - -
Ssu6g2380 887 Gene3D - 509 590 IPR036400 -
Ssu6g2380 887 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 511 591 IPR036400 -
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 329 341 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 108 124 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 245 261 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 262 275 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 439 452 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 86 100 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 172 184 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 360 374 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 374 386 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 161 172 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 187 202 IPR008335 GO:0016491
Ssu6g2380 887 PRINTS Eukaryotic molybdopterin domain signature 401 411 IPR008335 GO:0016491
Ssu6g2380 887 Pfam Mo-co oxidoreductase dimerisation domain 327 458 IPR005066 GO:0016491|GO:0030151
Ssu6g2380 887 SMART Cyt_b5_2 516 588 IPR001199 -
Ssu6g2380 887 Pfam Oxidoreductase molybdopterin binding domain 120 299 IPR000572 -
Ssu6g2380 887 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 631 743 IPR017927 GO:0016491
Ssu6g2380 887 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 68 329 IPR036374 -
Ssu6g2380 887 PIRSF Nitr_rd_NADH 18 886 IPR012137 GO:0006809|GO:0042128|GO:0050464
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 683 690 IPR001709 GO:0016491
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 831 847 IPR001709 GO:0016491
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 799 810 IPR001709 GO:0016491
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 855 863 IPR001709 GO:0016491
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 547 557 IPR001709 GO:0016491
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 761 780 IPR001709 GO:0016491
Ssu6g2380 887 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 787 796 IPR001709 GO:0016491
Ssu6g2380 887 Pfam Oxidoreductase FAD-binding domain 636 742 IPR008333 -
Ssu6g2380 887 Pfam Oxidoreductase NAD-binding domain 762 869 IPR001433 GO:0016491
Ssu6g2380 887 Gene3D - 738 887 IPR039261 -
Ssu6g2380 887 PANTHER NADH-CYTOCHROME B5 REDUCTASE 46 887 IPR001834 GO:0016491
Ssu6g2380 887 Gene3D - 70 320 IPR036374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2380 Ssu-Chr6 55015812 55022731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2380 618 878 NADPH P450 reductases AT5G17770 38.783 3.42e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2380 K10534 - gmx:100813471 1653.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2380 6 55015812 55022731 Ssu6g2380 6 55015812 55022731 ECH