Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2377 ATGGTTGCCAATGACATGACCATAACTTTAAAGCATAATCTCATCCTCAACAGCTTCAGGACTATGGATGGGCATGACGCTGATGTCCACGTCACCAGCCATAATTGTATCACGTTCCAATACATCTCCAATGTTATCATACACAACATCCATATGCACCACTGCACACCTTTCGGGAACACCAACATACACACGAGTCCAATGCATGTGGGGTGGAGAGGCAAATCGGACGGTTGTGGGATTTCCATCTTTGGCTCTTGGAAGATATGGATCGACCATTAA 282 0.4539 MVANDMTITLKHNLILNSFRTMDGHDADVHVTSHNCITFQYISNVIIHNIHMHHCTPFGNTNIHTSPMHVGWRGKSDGCGISIFGSWKIWIDH 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2377 93 PANTHER PECTATE LYASE 2 93 - -
Ssu6g2377 93 SUPERFAMILY Pectin lyase-like 3 93 IPR011050 -
Ssu6g2377 93 Gene3D - 1 93 IPR012334 -
Ssu6g2377 93 PANTHER PECTATE LYASE 18-RELATED 2 93 IPR045032 GO:0030570
Ssu6g2377 93 PRINTS Pollen allergen Amb family signature 13 29 IPR018082 -
Ssu6g2377 93 PRINTS Pollen allergen Amb family signature 77 93 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2377 Ssu-Chr6 54954935 54955216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2377 1 93 Polysaccharide Lyase AT3G07010 51.613 3.88e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2377 K01728 - gmx:100808438 156.377