Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2372 ATGGATGAGAACCCTAACCTCTCACTCCCTCGtgtctcttcctcttcctcccaGGAATTCCTCAAAGAAGTCCAAGCTGCGCTCAAGCGCCATCGCCCTCTAGGTACAGCGCAACCGCATAGCGTGAGGCCAAAGCGCTCCATGGTGGCTCAGCGAAACCTCGCGAACAAGTCCGATGAGGAACCTCCGTCGATTTCGGACACGTGCACCGGTGAAGGCTGTAAAAACGACCCCTCTTTGCCGGTGGAATCTCAAAGTGTAGTAGGTGCACACAAGAAGGTTCCGTTTTCAACCGAGAGCAACAAGGCCACTGCACAGCCAcaggGGGTCAATGTTGTAAAAGCCACTGAGTTGGAGAACATATCATCTCATATGGGTTCACTTGCATTGACAGATGAAGTATCAATTGGATTCAATCAACACGTGAAGCACCAAAATATGCGGCAGGCAGAGTGTGAAACTTGTTTGATATCAGAGGGAGGCAAGAGTTCTCTGCTGCCAAAGAGAACAATAGTTACTCAGGATCATCTGCAGCaattcaaaaactttttgagCCAACCAGCTACACAATCTTCTGTAGTGGGACCCCCATGTCCTACAACTACGTCAGTCCATTCAACTTCAGCTCTGATGCTGAATTCTATAACTCATTGTTCTCATTCCTGTATAGATAGTGGCTCACATGTGGCTGCAGAACCTTATGGGAACCTGAATGTTAATCCTCATCCTATAAGTCAAGGGGCtgttaaatcatcaaataatacCCTGAAAGACACCAATAGAATGTCAATTGATCAGGTGGCAAGTGCAGTCCAAGCTTGTAATTCACTAATTGATGCAGAGTTGACATTTAATCAGAGTGACCTATCTAAGGAGCAGCAAGGATGTATGTTAAAGGAAGCTagtatttcaaaatatacttcttGTCGCAATGATATGTTAAGTAAAGGGGAAGAGTCTGCAGCTGTTACCAACATACAGCCTCAGGCTCTGACTTCATCTTCAGATGTGAAGTTGGAGTCTTCTAGATtagaaaaacaagagaaaactGCAAGTTGTAAAGGATCATCAGGCACTCGGAAGAGGACCTATGACCCTGAGTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGCAGTGGTGGAAGCAGCGAGGTACACAAGGTGATTTCATCAGACTGTACAATCTATgcacttaaaaagataaaactaaaGGGCCGTGATTATGCCACTGCATATGGCTTTTGTCAAGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATTATATCATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTATTCGAGGGAGTCATAAATGGCTCCTTCAGTAATAAGGATGGTAGAGTCAAGGATGATGGATATATATACATGGTACTTGAATATGGGGAAATCGATTTGGCTCAGATGTTGTCTCAAAAGTGGAAGGAACTGGATGGAAGCAACCAGACCATAGATGAAAACTGGCTTCGATTTTTTTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAAGAACGCATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCTTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGCGATACAACAAACATCCAACGTGATTCACAGGTAGGTACTCTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCAAGTGGAAACATCATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTGTATGGGAGAACACCCTTTTTTGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAATCCGTGGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGCTGCTCCAGCATCCTTTTCTAGTTCCTCCGGTTCCATGTCATCCATCTTTGACCCATGACCATACCTTTAAATTGCTGCAACTTATTCTTGAAACTTGCACAAATGACCCAGAAGCATCCCAGCTCTGTTGTCAGCTCCAACAGGTGCTGGTAAGTTAA 2148 0.4134 MDENPNLSLPRVSSSSSQEFLKEVQAALKRHRPLGTAQPHSVRPKRSMVAQRNLANKSDEEPPSISDTCTGEGCKNDPSLPVESQSVVGAHKKVPFSTESNKATAQPQGVNVVKATELENISSHMGSLALTDEVSIGFNQHVKHQNMRQAECETCLISEGGKSSLLPKRTIVTQDHLQQFKNFLSQPATQSSVVGPPCPTTTSVHSTSALMLNSITHCSHSCIDSGSHVAAEPYGNLNVNPHPISQGAVKSSNNTLKDTNRMSIDQVASAVQACNSLIDAELTFNQSDLSKEQQGCMLKEASISKYTSCRNDMLSKGEESAAVTNIQPQALTSSSDVKLESSRLEKQEKTASCKGSSGTRKRTYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNYIIQLIDYEVTDKALFEGVINGSFSNKDGRVKDDGYIYMVLEYGEIDLAQMLSQKWKELDGSNQTIDENWLRFFWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGNIIKCGRPSDIWSLGCILYQMVYGRTPFFDYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLQHPFLVPPVPCHPSLTHDHTFKLLQLILETCTNDPEASQLCCQLQQVLVS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2372 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Ssu6g2372 715 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Ssu6g2372 715 MobiDBLite consensus disorder prediction 334 360 - -
Ssu6g2372 715 Gene3D Transferase(Phosphotransferase) domain 1 491 672 - -
Ssu6g2372 715 MobiDBLite consensus disorder prediction 51 83 - -
Ssu6g2372 715 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g2372 715 SMART serkin_6 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2372 715 Pfam Protein kinase domain 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2372 715 SUPERFAMILY Protein kinase-like (PK-like) 371 679 IPR011009 -
Ssu6g2372 715 ProSiteProfiles Protein kinase domain profile. 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2372 715 Gene3D Phosphorylase Kinase; domain 1 370 454 - -
Ssu6g2372 715 PANTHER MIXED LINEAGE PROTEIN KINASE 9 714 - -
Ssu6g2372 715 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 9 714 IPR027084 GO:0004712|GO:0007093|GO:0051304
Ssu6g2372 715 MobiDBLite consensus disorder prediction 1 84 - -
Ssu6g2372 715 CDD PKc_Mps1 375 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2372 Ssu-Chr6 54763827 54770015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2372 383 671 MAP Kinase Kinase Kinase AT4G08470 29.010 5.26e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Ssu6g2372 Pkinase 7.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2372 K08866 - gmx:100795003 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2372 6 54763827 54770015 Ssu6g2372 6 54763827 54770015 ECH