LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g2362	ATGCtcaattttaagaaattgtCTCTTCTATTGACGTTGATGTTTTTCCTACGGCAGCCTGTAATAGGCAAGATCCACTGCACGCTAAAATGTGGAGGGGTTCATATTCAATTTCCATTTTATCTCAGAAACAGCAACTTGAATCAGACCACCGACTATCCCCCTGGGTTCGATCTGTTATGTACCGAAAAAGATGAGACTATGCTGGAGCTGCCTGCTGTTCCAATAAAATTGTTTGTCAGAAACATTGATTACGAATTTCAGCGAATTGAAATATATGAGCCCGAAAATTGCCTTCCCAGTCAGCTCTTGAAACTCGGCAACGCATCCGTTTCTCCATTCAATTTTGCTCCGCAACCTTATAATTCTCCCGGGACAAATGTTTCCTTCTTCCGTTGCGATTCGATGTCATGTCCTATTTTGCTACTTCCATCCGACCAAATCGTTTATTATAATGAGcccttcatttattataataacatcGACATACTATCCTGCACCAAGGTGAAAGATGTTTTGTTCGTCCAgtggaaatattattattaccatcTTTATGGCGGAATGGTGCTTATGGAATGGTCGAAACCGGACTGTGGTTACTGTGAAGCACAAGGCCAGAAATGTAAATGGAAGAACGGAACCAACGGGGAAACTGAATGTTTCGTTTGCCCAACAAACAGGACTCCAACATCCACTATTGTACTCATTGCTACAGTTCGCTGCTATACTGAATCTCTGTTTGCGCTAAACATGATTCGGCAAGATCTTCCAAACAGTCATTGCTATGCTTCTTTACGTCGGTCCATAAAGAACCTGTTGAATCAAGATTGGAAAGAAATGTCTGCTTGGTTGGAGAGAAAGATCGGTCCATAA	873	0.3952	MLNFKKLSLLLTLMFFLRQPVIGKIHCTLKCGGVHIQFPFYLRNSNLNQTTDYPPGFDLLCTEKDETMLELPAVPIKLFVRNIDYEFQRIEIYEPENCLPSQLLKLGNASVSPFNFAPQPYNSPGTNVSFFRCDSMSCPILLLPSDQIVYYNEPFIYYNNIDILSCTKVKDVLFVQWKYYYYHLYGGMVLMEWSKPDCGYCEAQGQKCKWKNGTNGETECFVCPTNRTPTSTIVLIATVRCYTESLFALNMIRQDLPNSHCYASLRRSIKNLLNQDWKEMSAWLERKIGP	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g2362	290	Pfam	Wall-associated receptor kinase galacturonan-binding	27	93	IPR025287	GO:0030247
	Ssu6g2362	290	PANTHER	RING-H2 FINGER PROTEIN ATL21A-RELATED	15	222	-	-
	Ssu6g2362	290	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	15	222	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g2362	Ssu-Chr6	54171437	54174159	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g2362	31	221	C3H Transcription Factor Family	AT2G46495	27.700	5.44e-13	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g2362	-		-	gmx:100816669	298.516